Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.81■□□□□ 0.92
CDT1Q9H211 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
CDT1Q9H211 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.81■□□□□ 0.92
CDT1Q9H211 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.81■□□□□ 0.92
CDT1Q9H211 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.81■□□□□ 0.92
CDT1Q9H211 FAM87A-204ENST00000613235 858 ntBASIC20.81■□□□□ 0.92
CDT1Q9H211 AC005363.2-201ENST00000618631 242 ntBASIC20.81■□□□□ 0.92
CDT1Q9H211 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CDT1Q9H211 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CDT1Q9H211 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CDT1Q9H211 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDT1Q9H211 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDT1Q9H211 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.81■□□□□ 0.92
CDT1Q9H211 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.81■□□□□ 0.92
CDT1Q9H211 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CDT1Q9H211 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.81■□□□□ 0.92
CDT1Q9H211 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.81■□□□□ 0.92
CDT1Q9H211 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDT1Q9H211 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.8■□□□□ 0.92
CDT1Q9H211 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDT1Q9H211 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.8■□□□□ 0.92
CDT1Q9H211 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDT1Q9H211 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDT1Q9H211 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.8■□□□□ 0.92
CDT1Q9H211 FAM210CP-201ENST00000445714 574 ntBASIC20.8■□□□□ 0.92
CDT1Q9H211 KRT18P21-201ENST00000515767 1272 ntBASIC20.8■□□□□ 0.92
CDT1Q9H211 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.8■□□□□ 0.92
CDT1Q9H211 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDT1Q9H211 AC116562.4-202ENST00000641738 218 ntBASIC20.8■□□□□ 0.92
CDT1Q9H211 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
CDT1Q9H211 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.8■□□□□ 0.92
CDT1Q9H211 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDT1Q9H211 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDT1Q9H211 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.8■□□□□ 0.92
CDT1Q9H211 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.8■□□□□ 0.92
CDT1Q9H211 AC092338.2-201ENST00000568827 1415 ntBASIC20.79■□□□□ 0.92
CDT1Q9H211 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDT1Q9H211 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CDT1Q9H211 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDT1Q9H211 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.79■□□□□ 0.92
CDT1Q9H211 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDT1Q9H211 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.79■□□□□ 0.92
CDT1Q9H211 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.79■□□□□ 0.92
CDT1Q9H211 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDT1Q9H211 AC113347.1-201ENST00000413321 391 ntBASIC20.79■□□□□ 0.92
CDT1Q9H211 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.79■□□□□ 0.92
CDT1Q9H211 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.79■□□□□ 0.92
CDT1Q9H211 CCR12P-201ENST00000446203 998 ntBASIC20.79■□□□□ 0.92
CDT1Q9H211 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDT1Q9H211 CA15P1-201ENST00000481698 905 ntBASIC20.79■□□□□ 0.92
CDT1Q9H211 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
CDT1Q9H211 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.79■□□□□ 0.92
CDT1Q9H211 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.79■□□□□ 0.92
CDT1Q9H211 TEX21P-204ENST00000641479 1693 ntBASIC20.79■□□□□ 0.92
CDT1Q9H211 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CDT1Q9H211 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.78■□□□□ 0.92
CDT1Q9H211 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.78■□□□□ 0.92
CDT1Q9H211 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CDT1Q9H211 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 AC005521.1-201ENST00000393351 872 ntBASIC20.78■□□□□ 0.92
CDT1Q9H211 AC007663.1-201ENST00000438948 1240 ntBASIC20.78■□□□□ 0.92
CDT1Q9H211 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.78■□□□□ 0.92
CDT1Q9H211 AC128688.1-201ENST00000487626 519 ntBASIC20.78■□□□□ 0.92
CDT1Q9H211 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDT1Q9H211 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDT1Q9H211 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.77■□□□□ 0.92
CDT1Q9H211 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDT1Q9H211 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.77■□□□□ 0.92
CDT1Q9H211 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.77■□□□□ 0.92
CDT1Q9H211 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDT1Q9H211 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDT1Q9H211 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CDT1Q9H211 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CDT1Q9H211 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CDT1Q9H211 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.77■□□□□ 0.92
CDT1Q9H211 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
CDT1Q9H211 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDT1Q9H211 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDT1Q9H211 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDT1Q9H211 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.76■□□□□ 0.91
CDT1Q9H211 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDT1Q9H211 AC093484.2-201ENST00000580996 2166 ntBASIC20.76■□□□□ 0.91
CDT1Q9H211 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CDT1Q9H211 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CDT1Q9H211 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CDT1Q9H211 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDT1Q9H211 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDT1Q9H211 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms