Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.1■□□□□ 0.33
USB1Q9BQ65 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USB1Q9BQ65 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.09■□□□□ 0.33
USB1Q9BQ65 DGCR10-201ENST00000609839 495 ntBASIC17.09■□□□□ 0.33
USB1Q9BQ65 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 KRT8P8-201ENST00000434750 1448 ntBASIC17.09■□□□□ 0.33
USB1Q9BQ65 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USB1Q9BQ65 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USB1Q9BQ65 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USB1Q9BQ65 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USB1Q9BQ65 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.08■□□□□ 0.33
USB1Q9BQ65 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USB1Q9BQ65 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USB1Q9BQ65 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
USB1Q9BQ65 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 TMEM179-206ENST00000616017 1645 ntBASIC17.08■□□□□ 0.32
USB1Q9BQ65 AC009237.14-201ENST00000609975 1594 ntBASIC17.08■□□□□ 0.32
USB1Q9BQ65 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
USB1Q9BQ65 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USB1Q9BQ65 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USB1Q9BQ65 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
USB1Q9BQ65 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
USB1Q9BQ65 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USB1Q9BQ65 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.08■□□□□ 0.32
USB1Q9BQ65 FZD10-202ENST00000539839 3282 ntBASIC17.08■□□□□ 0.32
USB1Q9BQ65 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 MMP23A-201ENST00000234610 1017 ntBASIC17.07■□□□□ 0.32
USB1Q9BQ65 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 AL355075.4-201ENST00000554988 638 ntBASIC17.07■□□□□ 0.32
USB1Q9BQ65 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USB1Q9BQ65 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.07■□□□□ 0.32
USB1Q9BQ65 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms