Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 FP475955.4-201ENST00000623131 1990 ntBASIC16.72■□□□□ 0.27
NKX3-1Q99801 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 SLC29A4P1-201ENST00000398760 971 ntBASIC16.72■□□□□ 0.27
NKX3-1Q99801 BX276092.2-201ENST00000417668 665 ntBASIC16.72■□□□□ 0.27
NKX3-1Q99801 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 AC005082.1-201ENST00000413042 2259 ntBASIC16.72■□□□□ 0.27
NKX3-1Q99801 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 TFP1-202ENST00000475455 1573 ntBASIC16.72■□□□□ 0.27
NKX3-1Q99801 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NKX3-1Q99801 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 AC105036.2-201ENST00000569468 176 ntBASIC16.71■□□□□ 0.27
NKX3-1Q99801 AC006557.6-201ENST00000623071 864 ntBASIC16.71■□□□□ 0.27
NKX3-1Q99801 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NKX3-1Q99801 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NKX3-1Q99801 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
NKX3-1Q99801 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
NKX3-1Q99801 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 MKRN4P-201ENST00000444706 1521 ntBASIC16.7■□□□□ 0.26
NKX3-1Q99801 ZNF815P-204ENST00000434898 1737 ntBASIC16.7■□□□□ 0.26
NKX3-1Q99801 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 AL512625.2-201ENST00000417533 625 ntBASIC16.7■□□□□ 0.26
NKX3-1Q99801 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
NKX3-1Q99801 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NKX3-1Q99801 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
NKX3-1Q99801 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NKX3-1Q99801 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms