Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
NPAS1Q99742 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NPAS1Q99742 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NPAS1Q99742 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NPAS1Q99742 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NPAS1Q99742 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.49■□□□□ 0.39
NPAS1Q99742 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
NPAS1Q99742 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 AC005332.7-201ENST00000614046 2005 ntBASIC17.48■□□□□ 0.39
NPAS1Q99742 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 KRT16P1-201ENST00000399124 1418 ntBASIC17.48■□□□□ 0.39
NPAS1Q99742 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
NPAS1Q99742 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
NPAS1Q99742 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.48■□□□□ 0.39
NPAS1Q99742 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.48■□□□□ 0.39
NPAS1Q99742 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
NPAS1Q99742 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
NPAS1Q99742 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
NPAS1Q99742 MESTP1-201ENST00000404287 994 ntBASIC17.48■□□□□ 0.39
NPAS1Q99742 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 TSPY15P-201ENST00000457163 923 ntBASIC17.48■□□□□ 0.39
NPAS1Q99742 AC008040.2-201ENST00000461049 708 ntBASIC17.48■□□□□ 0.39
NPAS1Q99742 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.48■□□□□ 0.39
NPAS1Q99742 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.48■□□□□ 0.39
NPAS1Q99742 AL160286.2-201ENST00000567150 934 ntBASIC17.48■□□□□ 0.39
NPAS1Q99742 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.48■□□□□ 0.39
NPAS1Q99742 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.48■□□□□ 0.39
NPAS1Q99742 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
NPAS1Q99742 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.48■□□□□ 0.39
NPAS1Q99742 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.48■□□□□ 0.39
NPAS1Q99742 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NPAS1Q99742 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.48■□□□□ 0.39
NPAS1Q99742 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 AC011506.1-201ENST00000474329 610 ntBASIC17.47■□□□□ 0.39
NPAS1Q99742 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.47■□□□□ 0.39
NPAS1Q99742 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.47■□□□□ 0.39
NPAS1Q99742 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
NPAS1Q99742 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
NPAS1Q99742 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.47■□□□□ 0.39
NPAS1Q99742 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
NPAS1Q99742 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.47■□□□□ 0.39
NPAS1Q99742 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.47■□□□□ 0.39
NPAS1Q99742 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NPAS1Q99742 KRT8P41-201ENST00000533985 1514 ntBASIC17.47■□□□□ 0.39
NPAS1Q99742 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.46■□□□□ 0.39
NPAS1Q99742 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 MIR718-201ENST00000390190 70 ntBASIC17.46■□□□□ 0.39
NPAS1Q99742 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.46■□□□□ 0.39
NPAS1Q99742 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.46■□□□□ 0.39
NPAS1Q99742 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms