Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL359075.1-203ENST00000462729 1002 ntBASIC18.69■□□□□ 0.58
LMX1AQ8TE12 AL441883.1-201ENST00000566170 1045 ntBASIC18.69■□□□□ 0.58
LMX1AQ8TE12 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 AC091076.1-201ENST00000610741 619 ntBASIC18.69■□□□□ 0.58
LMX1AQ8TE12 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LMX1AQ8TE12 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.68■□□□□ 0.58
LMX1AQ8TE12 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 UPK3BP1-201ENST00000428678 509 ntBASIC18.68■□□□□ 0.58
LMX1AQ8TE12 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 HOMER2P1-201ENST00000455653 964 ntBASIC18.68■□□□□ 0.58
LMX1AQ8TE12 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.68■□□□□ 0.58
LMX1AQ8TE12 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LMX1AQ8TE12 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1AQ8TE12 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 AC009947.2-201ENST00000444014 672 ntBASIC18.66■□□□□ 0.58
LMX1AQ8TE12 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LMX1AQ8TE12 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms