Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC018553.1-201ENST00000616682 1458 ntBASIC5.91□□□□□ -1.46
SYNE1Q8NF91 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC006128.1-201ENST00000624704 1661 ntBASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC116351.2-201ENST00000606540 1585 ntBASIC5.91□□□□□ -1.46
SYNE1Q8NF91 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CD320-202ENST00000537716 1119 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 BID-212ENST00000614949 1988 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CRYGFP-201ENST00000418459 633 ntBASIC5.91□□□□□ -1.46
SYNE1Q8NF91 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms