Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 AC073210.2-201ENST00000430369 194 ntBASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 CNN2P6-201ENST00000439038 900 ntBASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 CDV3P1-201ENST00000471403 739 ntBASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 AC105036.2-201ENST00000569468 176 ntBASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 PTBP1P-201ENST00000554374 1601 ntBASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 AC069236.1-201ENST00000604339 616 ntBASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.74■□□□□ 0.43
ZNF540Q8NDQ6 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 AC087633.2-202ENST00000565166 1439 ntBASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 RBM17P2-201ENST00000616397 1405 ntBASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 MIR4758-201ENST00000577688 71 ntBASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 OR10C1-204ENST00000622521 1039 ntBASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF540Q8NDQ6 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
ZNF540Q8NDQ6 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms