Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 ECEL1P2-202ENST00000465689 757 ntBASIC17.79■□□□□ 0.44
BEST3Q8N1M1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BEST3Q8N1M1 AC096733.2-201ENST00000609937 1394 ntBASIC17.79■□□□□ 0.44
BEST3Q8N1M1 TCF3P1-201ENST00000423021 1937 ntBASIC17.78■□□□□ 0.44
BEST3Q8N1M1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.78■□□□□ 0.44
BEST3Q8N1M1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BEST3Q8N1M1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 INGX-201ENST00000359239 846 ntBASIC17.77■□□□□ 0.44
BEST3Q8N1M1 AC128688.1-201ENST00000487626 519 ntBASIC17.77■□□□□ 0.44
BEST3Q8N1M1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.77■□□□□ 0.44
BEST3Q8N1M1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BEST3Q8N1M1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 AC010203.1-204ENST00000548782 407 ntBASIC17.76■□□□□ 0.43
BEST3Q8N1M1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 AC112907.3-201ENST00000577781 2400 ntBASIC17.76■□□□□ 0.43
BEST3Q8N1M1 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BEST3Q8N1M1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms