Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LYSMD4Q5XG99 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LYSMD4Q5XG99 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LYSMD4Q5XG99 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LYSMD4Q5XG99 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
LYSMD4Q5XG99 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
LYSMD4Q5XG99 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.83■□□□□ 0.61
LYSMD4Q5XG99 AL691432.2-201ENST00000607222 2038 ntBASIC18.83■□□□□ 0.61
LYSMD4Q5XG99 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 AC004870.1-201ENST00000315132 882 ntBASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.83■□□□□ 0.6
LYSMD4Q5XG99 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 LINC00565-201ENST00000562710 2331 ntBASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 AC024243.1-201ENST00000609234 778 ntBASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LYSMD4Q5XG99 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.81■□□□□ 0.6
LYSMD4Q5XG99 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 AL845331.1-201ENST00000424978 1190 ntBASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 AP005212.1-201ENST00000581547 1997 ntBASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LYSMD4Q5XG99 AC016734.2-201ENST00000624325 1377 ntBASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms