Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.51■□□□□ 0.71
USP39Q53GS9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.51■□□□□ 0.71
USP39Q53GS9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.51■□□□□ 0.71
USP39Q53GS9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.51■□□□□ 0.71
USP39Q53GS9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USP39Q53GS9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP39Q53GS9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.51■□□□□ 0.71
USP39Q53GS9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.5■□□□□ 0.71
USP39Q53GS9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP39Q53GS9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
USP39Q53GS9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.5■□□□□ 0.71
USP39Q53GS9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP39Q53GS9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP39Q53GS9 KRT18P56-201ENST00000507275 550 ntBASIC19.5■□□□□ 0.71
USP39Q53GS9 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.5■□□□□ 0.71
USP39Q53GS9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
USP39Q53GS9 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.5■□□□□ 0.71
USP39Q53GS9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.5■□□□□ 0.71
USP39Q53GS9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP39Q53GS9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP39Q53GS9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
USP39Q53GS9 AC092338.2-201ENST00000568827 1415 ntBASIC19.5■□□□□ 0.71
USP39Q53GS9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.49■□□□□ 0.71
USP39Q53GS9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
USP39Q53GS9 AC138932.1-201ENST00000534164 6830 ntBASIC19.49■□□□□ 0.71
USP39Q53GS9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP39Q53GS9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.49■□□□□ 0.71
USP39Q53GS9 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.49■□□□□ 0.71
USP39Q53GS9 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
USP39Q53GS9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.49■□□□□ 0.71
USP39Q53GS9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USP39Q53GS9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.49■□□□□ 0.71
USP39Q53GS9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.49■□□□□ 0.71
USP39Q53GS9 AC140113.3-201ENST00000605663 199 ntBASIC19.49■□□□□ 0.71
USP39Q53GS9 AC011558.1-201ENST00000623459 338 ntBASIC19.49■□□□□ 0.71
USP39Q53GS9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.49■□□□□ 0.71
USP39Q53GS9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.49■□□□□ 0.71
USP39Q53GS9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP39Q53GS9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.48■□□□□ 0.71
USP39Q53GS9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
USP39Q53GS9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.48■□□□□ 0.71
USP39Q53GS9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
USP39Q53GS9 HOMER2P1-201ENST00000455653 964 ntBASIC19.48■□□□□ 0.71
USP39Q53GS9 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.48■□□□□ 0.71
USP39Q53GS9 AL121956.5-201ENST00000625261 221 ntBASIC19.48■□□□□ 0.71
USP39Q53GS9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
USP39Q53GS9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP39Q53GS9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.48■□□□□ 0.71
USP39Q53GS9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
USP39Q53GS9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP39Q53GS9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.48■□□□□ 0.71
USP39Q53GS9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP39Q53GS9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
USP39Q53GS9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.47■□□□□ 0.71
USP39Q53GS9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
USP39Q53GS9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 AC009947.2-201ENST00000444014 672 ntBASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms