Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 AL358472.4-201ENST00000633140 710 ntBASIC20.41■□□□□ 0.86
USP41Q3LFD5 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 KRT8P45-201ENST00000414328 1447 ntBASIC20.4■□□□□ 0.86
USP41Q3LFD5 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 AC104417.2-201ENST00000562989 1793 ntBASIC20.4■□□□□ 0.86
USP41Q3LFD5 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP41Q3LFD5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USP41Q3LFD5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP41Q3LFD5 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
USP41Q3LFD5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP41Q3LFD5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
USP41Q3LFD5 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP41Q3LFD5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP41Q3LFD5 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.39■□□□□ 0.85
USP41Q3LFD5 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
USP41Q3LFD5 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.39■□□□□ 0.85
USP41Q3LFD5 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.39■□□□□ 0.85
USP41Q3LFD5 AL023973.1-201ENST00000624619 620 ntBASIC20.39■□□□□ 0.85
USP41Q3LFD5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.39■□□□□ 0.85
USP41Q3LFD5 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.39■□□□□ 0.85
USP41Q3LFD5 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP41Q3LFD5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 AP000523.1-201ENST00000398242 1049 ntBASIC20.38■□□□□ 0.85
USP41Q3LFD5 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 AL441883.1-201ENST00000566170 1045 ntBASIC20.38■□□□□ 0.85
USP41Q3LFD5 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
USP41Q3LFD5 ZNF815P-204ENST00000434898 1737 ntBASIC20.38■□□□□ 0.85
USP41Q3LFD5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP41Q3LFD5 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 TCF3P1-201ENST00000423021 1937 ntBASIC20.37■□□□□ 0.85
USP41Q3LFD5 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 UPK3BP1-201ENST00000428678 509 ntBASIC20.37■□□□□ 0.85
USP41Q3LFD5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP41Q3LFD5 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
USP41Q3LFD5 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms