Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 LINC01465-201ENST00000408887 1940 ntBASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 AC018445.3-201ENST00000624177 1945 ntBASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 AF186192.3-201ENST00000583427 947 ntBASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 MIR4785-201ENST00000585005 73 ntBASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 AC073912.3-201ENST00000624414 853 ntBASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 AP000974.1-201ENST00000623909 2387 ntBASIC18.75■□□□□ 0.59
PTCHD3Q3KNS1 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 TSPY15P-201ENST00000457163 923 ntBASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 AC120498.9-201ENST00000339021 3867 ntBASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 AC098818.2-201ENST00000564925 2320 ntBASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 AC141586.3-201ENST00000562166 1838 ntBASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.74■□□□□ 0.59
PTCHD3Q3KNS1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 HLA-A-209ENST00000638375 975 ntBASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms