Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.75□□□□□ -0.21
COL7A1Q02388 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 GPAT2P1-201ENST00000444924 1672 ntBASIC13.75□□□□□ -0.21
COL7A1Q02388 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.75□□□□□ -0.21
COL7A1Q02388 FOSL1P1-201ENST00000511041 816 ntBASIC13.75□□□□□ -0.21
COL7A1Q02388 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
COL7A1Q02388 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL7A1Q02388 AL049796.1-201ENST00000565336 1766 ntBASIC13.75□□□□□ -0.21
COL7A1Q02388 AL691432.2-201ENST00000607222 2038 ntBASIC13.74□□□□□ -0.21
COL7A1Q02388 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 TOB2P1-201ENST00000469761 992 ntBASIC13.74□□□□□ -0.21
COL7A1Q02388 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 PGAM5P1-201ENST00000518923 814 ntBASIC13.74□□□□□ -0.21
COL7A1Q02388 KRT8P26-201ENST00000534154 1276 ntBASIC13.74□□□□□ -0.21
COL7A1Q02388 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC13.74□□□□□ -0.21
COL7A1Q02388 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.74□□□□□ -0.21
COL7A1Q02388 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC13.74□□□□□ -0.21
COL7A1Q02388 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC13.74□□□□□ -0.21
COL7A1Q02388 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 AC006128.1-201ENST00000624704 1661 ntBASIC13.74□□□□□ -0.21
COL7A1Q02388 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.74□□□□□ -0.21
COL7A1Q02388 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
COL7A1Q02388 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 MIR662-201ENST00000384847 95 ntBASIC13.74□□□□□ -0.21
COL7A1Q02388 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.74□□□□□ -0.21
COL7A1Q02388 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.74□□□□□ -0.21
COL7A1Q02388 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
COL7A1Q02388 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL7A1Q02388 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL7A1Q02388 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL7A1Q02388 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC13.73□□□□□ -0.21
COL7A1Q02388 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL7A1Q02388 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC13.73□□□□□ -0.21
COL7A1Q02388 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL7A1Q02388 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.73□□□□□ -0.21
COL7A1Q02388 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.73□□□□□ -0.21
COL7A1Q02388 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
COL7A1Q02388 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.73□□□□□ -0.21
COL7A1Q02388 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL7A1Q02388 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC13.73□□□□□ -0.21
COL7A1Q02388 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL7A1Q02388 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL7A1Q02388 AL117328.2-201ENST00000624617 1940 ntBASIC13.73□□□□□ -0.21
COL7A1Q02388 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC13.73□□□□□ -0.21
COL7A1Q02388 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC13.73□□□□□ -0.21
COL7A1Q02388 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL7A1Q02388 AC233702.3-201ENST00000578656 1387 ntBASIC13.73□□□□□ -0.21
COL7A1Q02388 ABR-217ENST00000572441 563 ntTSL 4 BASIC13.73□□□□□ -0.21
COL7A1Q02388 AC024243.1-201ENST00000609234 778 ntBASIC13.73□□□□□ -0.21
COL7A1Q02388 AL353801.3-201ENST00000609898 542 ntBASIC13.73□□□□□ -0.21
COL7A1Q02388 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC13.73□□□□□ -0.21
COL7A1Q02388 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC13.73□□□□□ -0.21
COL7A1Q02388 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL7A1Q02388 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 AP001271.2-201ENST00000624018 1556 ntBASIC13.72□□□□□ -0.21
COL7A1Q02388 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms