Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 AC120498.9-201ENST00000339021 3867 ntBASIC16.5■□□□□ 0.23
ABCA4P78363 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 IER3-202ENST00000376377 1350 ntBASIC16.5■□□□□ 0.23
ABCA4P78363 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 AP000523.1-201ENST00000398242 1049 ntBASIC16.5■□□□□ 0.23
ABCA4P78363 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.5■□□□□ 0.23
ABCA4P78363 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.5■□□□□ 0.23
ABCA4P78363 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.5■□□□□ 0.23
ABCA4P78363 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ABCA4P78363 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.49■□□□□ 0.23
ABCA4P78363 AP003041.3-201ENST00000527151 707 ntBASIC16.49■□□□□ 0.23
ABCA4P78363 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.49■□□□□ 0.23
ABCA4P78363 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
ABCA4P78363 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
ABCA4P78363 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.49■□□□□ 0.23
ABCA4P78363 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
ABCA4P78363 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ABCA4P78363 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
ABCA4P78363 HBZP1-201ENST00000354915 429 ntBASIC16.49■□□□□ 0.23
ABCA4P78363 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.49■□□□□ 0.23
ABCA4P78363 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.49■□□□□ 0.23
ABCA4P78363 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 AC004263.2-201ENST00000617183 678 ntBASIC16.49■□□□□ 0.23
ABCA4P78363 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.49■□□□□ 0.23
ABCA4P78363 KRT8P45-201ENST00000414328 1447 ntBASIC16.49■□□□□ 0.23
ABCA4P78363 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
ABCA4P78363 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.49■□□□□ 0.23
ABCA4P78363 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ABCA4P78363 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.48■□□□□ 0.23
ABCA4P78363 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.48■□□□□ 0.23
ABCA4P78363 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
ABCA4P78363 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ABCA4P78363 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 AC036111.1-201ENST00000533973 1582 ntBASIC16.48■□□□□ 0.23
ABCA4P78363 AL162377.1-201ENST00000618844 1793 ntBASIC16.48■□□□□ 0.23
ABCA4P78363 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.48■□□□□ 0.23
ABCA4P78363 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.48■□□□□ 0.23
ABCA4P78363 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.48■□□□□ 0.23
ABCA4P78363 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.48■□□□□ 0.23
ABCA4P78363 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ABCA4P78363 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.48■□□□□ 0.23
ABCA4P78363 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
ABCA4P78363 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
ABCA4P78363 KRT8P11-201ENST00000409686 1436 ntBASIC16.47■□□□□ 0.23
ABCA4P78363 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms