Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.81■□□□□ 0.6
PKNOX1P55347 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.81■□□□□ 0.6
PKNOX1P55347 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PKNOX1P55347 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PKNOX1P55347 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 AC009113.1-201ENST00000570267 2443 ntBASIC18.8■□□□□ 0.6
PKNOX1P55347 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PKNOX1P55347 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 MIR935-201ENST00000401179 91 ntBASIC18.8■□□□□ 0.6
PKNOX1P55347 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.8■□□□□ 0.6
PKNOX1P55347 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
PKNOX1P55347 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.8■□□□□ 0.6
PKNOX1P55347 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.8■□□□□ 0.6
PKNOX1P55347 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PKNOX1P55347 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
PKNOX1P55347 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PKNOX1P55347 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PKNOX1P55347 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKNOX1P55347 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
PKNOX1P55347 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
PKNOX1P55347 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.79■□□□□ 0.6
PKNOX1P55347 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.79■□□□□ 0.6
PKNOX1P55347 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PKNOX1P55347 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PKNOX1P55347 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.79■□□□□ 0.6
PKNOX1P55347 PNMA6B-201ENST00000538162 1200 ntBASIC18.79■□□□□ 0.6
PKNOX1P55347 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PKNOX1P55347 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.79■□□□□ 0.6
PKNOX1P55347 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.79■□□□□ 0.6
PKNOX1P55347 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKNOX1P55347 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.78■□□□□ 0.6
PKNOX1P55347 AC104417.2-201ENST00000562989 1793 ntBASIC18.78■□□□□ 0.6
PKNOX1P55347 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.78■□□□□ 0.6
PKNOX1P55347 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.78■□□□□ 0.6
PKNOX1P55347 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
PKNOX1P55347 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.78■□□□□ 0.6
PKNOX1P55347 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.78■□□□□ 0.6
PKNOX1P55347 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.78■□□□□ 0.6
PKNOX1P55347 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PKNOX1P55347 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PKNOX1P55347 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.78■□□□□ 0.6
PKNOX1P55347 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms