Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.05■□□□□ 0.8
EPHB3P54753 AC112907.3-201ENST00000577781 2400 ntBASIC20.05■□□□□ 0.8
EPHB3P54753 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.05■□□□□ 0.8
EPHB3P54753 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.05■□□□□ 0.8
EPHB3P54753 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.05■□□□□ 0.8
EPHB3P54753 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
EPHB3P54753 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
EPHB3P54753 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.04■□□□□ 0.8
EPHB3P54753 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.04■□□□□ 0.8
EPHB3P54753 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.04■□□□□ 0.8
EPHB3P54753 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.04■□□□□ 0.8
EPHB3P54753 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.04■□□□□ 0.8
EPHB3P54753 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.04■□□□□ 0.8
EPHB3P54753 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.04■□□□□ 0.8
EPHB3P54753 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
EPHB3P54753 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.04■□□□□ 0.8
EPHB3P54753 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.03■□□□□ 0.8
EPHB3P54753 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.03■□□□□ 0.8
EPHB3P54753 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.03■□□□□ 0.8
EPHB3P54753 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.03■□□□□ 0.8
EPHB3P54753 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.03■□□□□ 0.8
EPHB3P54753 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.03■□□□□ 0.8
EPHB3P54753 MYC-208ENST00000641036 567 ntBASIC20.03■□□□□ 0.8
EPHB3P54753 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
EPHB3P54753 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.03■□□□□ 0.8
EPHB3P54753 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
EPHB3P54753 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
EPHB3P54753 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
EPHB3P54753 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.02■□□□□ 0.8
EPHB3P54753 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 AL031133.1-201ENST00000406807 723 ntBASIC20.02■□□□□ 0.8
EPHB3P54753 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.02■□□□□ 0.8
EPHB3P54753 TSPY23P-201ENST00000440136 739 ntBASIC20.02■□□□□ 0.8
EPHB3P54753 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.02■□□□□ 0.8
EPHB3P54753 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.02■□□□□ 0.8
EPHB3P54753 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.02■□□□□ 0.8
EPHB3P54753 AL441883.1-201ENST00000566170 1045 ntBASIC20.02■□□□□ 0.8
EPHB3P54753 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 AC091076.1-201ENST00000610741 619 ntBASIC20.02■□□□□ 0.8
EPHB3P54753 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
EPHB3P54753 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
EPHB3P54753 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
EPHB3P54753 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 SDHAP1-207ENST00000440850 2000 ntBASIC20.02■□□□□ 0.79
EPHB3P54753 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
EPHB3P54753 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.02■□□□□ 0.79
EPHB3P54753 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
EPHB3P54753 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
EPHB3P54753 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.01■□□□□ 0.79
EPHB3P54753 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.01■□□□□ 0.79
EPHB3P54753 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.01■□□□□ 0.79
EPHB3P54753 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.01■□□□□ 0.79
EPHB3P54753 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
EPHB3P54753 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
EPHB3P54753 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.01■□□□□ 0.79
EPHB3P54753 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.01■□□□□ 0.79
EPHB3P54753 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
EPHB3P54753 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.01■□□□□ 0.79
EPHB3P54753 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.01■□□□□ 0.79
EPHB3P54753 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.01■□□□□ 0.79
EPHB3P54753 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms