Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.96■□□□□ 0.79
PTPN9P43378 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
PTPN9P43378 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.96■□□□□ 0.79
PTPN9P43378 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.96■□□□□ 0.79
PTPN9P43378 AC008550.1-201ENST00000511500 884 ntBASIC19.96■□□□□ 0.79
PTPN9P43378 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.96■□□□□ 0.79
PTPN9P43378 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
PTPN9P43378 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.96■□□□□ 0.79
PTPN9P43378 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.96■□□□□ 0.79
PTPN9P43378 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTPN9P43378 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
PTPN9P43378 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.95■□□□□ 0.78
PTPN9P43378 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
PTPN9P43378 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 MESTP1-201ENST00000404287 994 ntBASIC19.95■□□□□ 0.78
PTPN9P43378 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.95■□□□□ 0.78
PTPN9P43378 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.95■□□□□ 0.78
PTPN9P43378 B3GAT3P1-201ENST00000471720 806 ntBASIC19.95■□□□□ 0.78
PTPN9P43378 AC011506.1-201ENST00000474329 610 ntBASIC19.95■□□□□ 0.78
PTPN9P43378 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.95■□□□□ 0.78
PTPN9P43378 MIR6786-201ENST00000616843 113 ntBASIC19.95■□□□□ 0.78
PTPN9P43378 AC130371.2-201ENST00000619443 611 ntBASIC19.95■□□□□ 0.78
PTPN9P43378 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN9P43378 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.95■□□□□ 0.78
PTPN9P43378 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
PTPN9P43378 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 KRT8P11-201ENST00000409686 1436 ntBASIC19.94■□□□□ 0.78
PTPN9P43378 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PTPN9P43378 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN9P43378 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PTPN9P43378 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN9P43378 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.94■□□□□ 0.78
PTPN9P43378 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.94■□□□□ 0.78
PTPN9P43378 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.94■□□□□ 0.78
PTPN9P43378 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.94■□□□□ 0.78
PTPN9P43378 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 AC116562.2-201ENST00000507042 360 ntBASIC19.94■□□□□ 0.78
PTPN9P43378 NUDT16P1-203ENST00000513809 620 ntBASIC19.94■□□□□ 0.78
PTPN9P43378 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN9P43378 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.94■□□□□ 0.78
PTPN9P43378 AC011298.2-201ENST00000617989 482 ntBASIC19.94■□□□□ 0.78
PTPN9P43378 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN9P43378 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN9P43378 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PTPN9P43378 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN9P43378 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.93■□□□□ 0.78
PTPN9P43378 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.93■□□□□ 0.78
PTPN9P43378 FSCN1P1-201ENST00000568912 1481 ntBASIC19.93■□□□□ 0.78
PTPN9P43378 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.93■□□□□ 0.78
PTPN9P43378 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 MIR718-201ENST00000390190 70 ntBASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms