Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 FAAHP1-202ENST00000446499 1238 ntBASIC32.22■■■□□ 2.75
CUX1P39880 MPI-205ENST00000562606 1052 ntTSL 3 BASIC32.22■■■□□ 2.75
CUX1P39880 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC32.22■■■□□ 2.75
CUX1P39880 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CUX1P39880 ZNF815P-204ENST00000434898 1737 ntBASIC32.21■■■□□ 2.75
CUX1P39880 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
CUX1P39880 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
CUX1P39880 AL023284.2-201ENST00000405850 579 ntBASIC32.21■■■□□ 2.75
CUX1P39880 CHCHD2P8-201ENST00000429873 447 ntBASIC32.21■■■□□ 2.75
CUX1P39880 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
CUX1P39880 AC079781.3-201ENST00000449110 356 ntBASIC32.21■■■□□ 2.75
CUX1P39880 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC32.21■■■□□ 2.75
CUX1P39880 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC32.21■■■□□ 2.75
CUX1P39880 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC32.21■■■□□ 2.75
CUX1P39880 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC32.21■■■□□ 2.75
CUX1P39880 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CUX1P39880 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC32.21■■■□□ 2.75
CUX1P39880 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
CUX1P39880 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
CUX1P39880 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC32.21■■■□□ 2.75
CUX1P39880 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC32.21■■■□□ 2.75
CUX1P39880 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC32.21■■■□□ 2.75
CUX1P39880 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC32.21■■■□□ 2.75
CUX1P39880 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC32.21■■■□□ 2.75
CUX1P39880 AC104692.2-201ENST00000603054 253 ntBASIC32.21■■■□□ 2.75
CUX1P39880 AL157888.1-201ENST00000631930 593 ntBASIC32.21■■■□□ 2.75
CUX1P39880 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC32.2■■■□□ 2.75
CUX1P39880 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CUX1P39880 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC32.2■■■□□ 2.75
CUX1P39880 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CUX1P39880 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CUX1P39880 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC32.2■■■□□ 2.75
CUX1P39880 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC32.2■■■□□ 2.74
CUX1P39880 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC32.2■■■□□ 2.74
CUX1P39880 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC32.2■■■□□ 2.74
CUX1P39880 KRT8P26-201ENST00000534154 1276 ntBASIC32.2■■■□□ 2.74
CUX1P39880 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC32.2■■■□□ 2.74
CUX1P39880 AC023511.2-201ENST00000618803 211 ntBASIC32.2■■■□□ 2.74
CUX1P39880 KRT18P1-202ENST00000452408 1331 ntBASIC32.2■■■□□ 2.74
CUX1P39880 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC32.2■■■□□ 2.74
CUX1P39880 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC32.2■■■□□ 2.74
CUX1P39880 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.74
CUX1P39880 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC32.19■■■□□ 2.74
CUX1P39880 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX1P39880 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX1P39880 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC32.19■■■□□ 2.74
CUX1P39880 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC32.19■■■□□ 2.74
CUX1P39880 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX1P39880 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC32.18■■■□□ 2.74
CUX1P39880 GOLGA6L5P-202ENST00000515341 1828 ntBASIC32.18■■■□□ 2.74
CUX1P39880 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX1P39880 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX1P39880 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC32.18■■■□□ 2.74
CUX1P39880 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX1P39880 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CUX1P39880 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC32.18■■■□□ 2.74
CUX1P39880 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX1P39880 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CUX1P39880 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC32.17■■■□□ 2.74
CUX1P39880 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC32.17■■■□□ 2.74
CUX1P39880 MIR3180-5-201ENST00000583743 153 ntBASIC32.17■■■□□ 2.74
CUX1P39880 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CUX1P39880 SDHAP1-207ENST00000440850 2000 ntBASIC32.17■■■□□ 2.74
CUX1P39880 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX1P39880 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX1P39880 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC32.16■■■□□ 2.74
CUX1P39880 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC32.16■■■□□ 2.74
CUX1P39880 EMBP1-201ENST00000458200 901 ntBASIC32.16■■■□□ 2.74
CUX1P39880 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC32.16■■■□□ 2.74
CUX1P39880 CIB2-208ENST00000560618 804 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 RNF126P1-202ENST00000569893 925 ntBASIC32.16■■■□□ 2.74
CUX1P39880 SPEG-225ENST00000617028 815 ntTSL 5 BASIC32.16■■■□□ 2.74
CUX1P39880 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CUX1P39880 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 TSPY19P-201ENST00000418461 509 ntBASIC32.16■■■□□ 2.74
CUX1P39880 TSPY18P-201ENST00000441642 509 ntBASIC32.16■■■□□ 2.74
CUX1P39880 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX1P39880 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC32.16■■■□□ 2.74
CUX1P39880 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC32.16■■■□□ 2.74
CUX1P39880 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC32.15■■■□□ 2.74
CUX1P39880 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC32.15■■■□□ 2.74
CUX1P39880 GAS2L1P1-201ENST00000420145 1480 ntBASIC32.15■■■□□ 2.74
CUX1P39880 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC32.15■■■□□ 2.74
CUX1P39880 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
CUX1P39880 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC32.15■■■□□ 2.74
CUX1P39880 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
CUX1P39880 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
CUX1P39880 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
CUX1P39880 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms