Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
COL9A1P20849 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.77■□□□□ 0.76
COL9A1P20849 RNA5SP419-201ENST00000515908 135 ntBASIC19.77■□□□□ 0.76
COL9A1P20849 AP000867.3-201ENST00000524675 377 ntBASIC19.77■□□□□ 0.76
COL9A1P20849 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.77■□□□□ 0.76
COL9A1P20849 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL9A1P20849 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.77■□□□□ 0.76
COL9A1P20849 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.77■□□□□ 0.76
COL9A1P20849 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.77■□□□□ 0.76
COL9A1P20849 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL9A1P20849 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.77■□□□□ 0.75
COL9A1P20849 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL9A1P20849 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
COL9A1P20849 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL9A1P20849 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL9A1P20849 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.76■□□□□ 0.75
COL9A1P20849 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.76■□□□□ 0.75
COL9A1P20849 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 SPDYE15P-201ENST00000424157 909 ntBASIC19.76■□□□□ 0.75
COL9A1P20849 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.76■□□□□ 0.75
COL9A1P20849 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.76■□□□□ 0.75
COL9A1P20849 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.76■□□□□ 0.75
COL9A1P20849 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.76■□□□□ 0.75
COL9A1P20849 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL9A1P20849 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.76■□□□□ 0.75
COL9A1P20849 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 RCC2P6-201ENST00000526625 1557 ntBASIC19.75■□□□□ 0.75
COL9A1P20849 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.75■□□□□ 0.75
COL9A1P20849 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.75■□□□□ 0.75
COL9A1P20849 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
COL9A1P20849 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.75■□□□□ 0.75
COL9A1P20849 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.75■□□□□ 0.75
COL9A1P20849 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.75■□□□□ 0.75
COL9A1P20849 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.75■□□□□ 0.75
COL9A1P20849 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL9A1P20849 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL9A1P20849 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL9A1P20849 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.74■□□□□ 0.75
COL9A1P20849 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 HBZP1-201ENST00000354915 429 ntBASIC19.74■□□□□ 0.75
COL9A1P20849 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL9A1P20849 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.74■□□□□ 0.75
COL9A1P20849 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.74■□□□□ 0.75
COL9A1P20849 GCSHP2-201ENST00000560971 527 ntBASIC19.74■□□□□ 0.75
COL9A1P20849 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.74■□□□□ 0.75
COL9A1P20849 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
COL9A1P20849 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL9A1P20849 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
COL9A1P20849 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COL9A1P20849 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL9A1P20849 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.73■□□□□ 0.75
COL9A1P20849 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL9A1P20849 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.73■□□□□ 0.75
COL9A1P20849 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.73■□□□□ 0.75
COL9A1P20849 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.73■□□□□ 0.75
COL9A1P20849 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.73■□□□□ 0.75
COL9A1P20849 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.73■□□□□ 0.75
COL9A1P20849 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.73■□□□□ 0.75
COL9A1P20849 AL353801.3-201ENST00000609898 542 ntBASIC19.73■□□□□ 0.75
COL9A1P20849 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms