Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.76■□□□□ 0.59
SIX3O95343 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.76■□□□□ 0.59
SIX3O95343 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX3O95343 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.76■□□□□ 0.59
SIX3O95343 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.76■□□□□ 0.59
SIX3O95343 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.76■□□□□ 0.59
SIX3O95343 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SIX3O95343 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.75■□□□□ 0.59
SIX3O95343 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX3O95343 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
SIX3O95343 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX3O95343 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX3O95343 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.75■□□□□ 0.59
SIX3O95343 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SIX3O95343 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.75■□□□□ 0.59
SIX3O95343 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
SIX3O95343 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
SIX3O95343 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SIX3O95343 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
SIX3O95343 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SIX3O95343 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
SIX3O95343 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 AC104581.1-202ENST00000635932 2618 ntBASIC18.74■□□□□ 0.59
SIX3O95343 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
SIX3O95343 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.74■□□□□ 0.59
SIX3O95343 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.74■□□□□ 0.59
SIX3O95343 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.74■□□□□ 0.59
SIX3O95343 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.74■□□□□ 0.59
SIX3O95343 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 AC020763.4-201ENST00000623414 4170 ntBASIC18.74■□□□□ 0.59
SIX3O95343 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
SIX3O95343 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SIX3O95343 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX3O95343 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
SIX3O95343 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.73■□□□□ 0.59
SIX3O95343 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.73■□□□□ 0.59
SIX3O95343 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms