Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM38O00635 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM38O00635 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM38O00635 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM38O00635 NAPSB-206ENST00000562112 1266 ntBASIC19.3■□□□□ 0.68
TRIM38O00635 AL049597.2-201ENST00000565575 961 ntBASIC19.3■□□□□ 0.68
TRIM38O00635 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM38O00635 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 AC010947.1-201ENST00000623454 693 ntBASIC19.3■□□□□ 0.68
TRIM38O00635 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
TRIM38O00635 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM38O00635 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
TRIM38O00635 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM38O00635 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM38O00635 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM38O00635 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 ARMC10P1-201ENST00000313754 855 ntBASIC19.29■□□□□ 0.68
TRIM38O00635 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM38O00635 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM38O00635 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM38O00635 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TRIM38O00635 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM38O00635 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM38O00635 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM38O00635 AC113347.1-201ENST00000413321 391 ntBASIC19.28■□□□□ 0.68
TRIM38O00635 KRT18P57-201ENST00000443599 1254 ntBASIC19.28■□□□□ 0.68
TRIM38O00635 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM38O00635 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM38O00635 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.28■□□□□ 0.68
TRIM38O00635 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM38O00635 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
TRIM38O00635 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM38O00635 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM38O00635 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM38O00635 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM38O00635 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM38O00635 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM38O00635 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.27■□□□□ 0.68
TRIM38O00635 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.27■□□□□ 0.68
TRIM38O00635 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.27■□□□□ 0.68
TRIM38O00635 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.27■□□□□ 0.68
TRIM38O00635 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM38O00635 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM38O00635 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM38O00635 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms