Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 GUSBP5-201ENST00000418136 578 ntBASIC13.65□□□□□ -0.22
LINC01549A6NIU2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 SLC7A5P2-201ENST00000553010 536 ntBASIC13.65□□□□□ -0.22
LINC01549A6NIU2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 TEX21P-204ENST00000641479 1693 ntBASIC13.65□□□□□ -0.22
LINC01549A6NIU2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC01549A6NIU2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 CASP6-205ENST00000505486 538 ntTSL 4 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 AP001160.3-201ENST00000601484 763 ntBASIC13.64□□□□□ -0.23
LINC01549A6NIU2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC01549A6NIU2 AC135279.3-201ENST00000610945 1311 ntBASIC13.64□□□□□ -0.23
LINC01549A6NIU2 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 AL512353.2-201ENST00000448759 1962 ntBASIC13.63□□□□□ -0.23
LINC01549A6NIU2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 OR6D1P-203ENST00000641209 4860 ntBASIC13.63□□□□□ -0.23
LINC01549A6NIU2 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 UNC93B3-201ENST00000308076 687 ntBASIC13.63□□□□□ -0.23
LINC01549A6NIU2 NT5C3AP1-201ENST00000394500 1012 ntBASIC13.63□□□□□ -0.23
LINC01549A6NIU2 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 FP475955.4-201ENST00000623131 1990 ntBASIC13.63□□□□□ -0.23
LINC01549A6NIU2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC01549A6NIU2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC01549A6NIU2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC01549A6NIU2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.62□□□□□ -0.23
LINC01549A6NIU2 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms