Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 RCC2P6-201ENST00000526625 1557 ntBASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 AC004951.3-201ENST00000418645 1148 ntBASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 MIR6786-201ENST00000616843 113 ntBASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 AC011298.2-201ENST00000617989 482 ntBASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRAV41A0A0B4J266 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 AC093484.2-201ENST00000580996 2166 ntBASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 AP003071.4-201ENST00000562276 1284 ntBASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TRAV41A0A0B4J266 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 B3GAT3P1-201ENST00000471720 806 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms