Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 RPS2P55-201ENST00000397318 883 ntBASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AC107956.1-201ENST00000494359 873 ntBASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AP006587.1-201ENST00000534129 1502 ntBASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AL020996.1-203ENST00000536896 2307 ntBASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC25.87■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MTDHP1-201ENST00000605323 784 ntBASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 GPALPP1-207ENST00000611650 899 ntBASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 AIRN-201ENST00000601203 4374 ntBASIC25.84■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC25.83■■□□□ 1.73
SENP3-EIF4A1A0A087X0R7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC25.83■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 KRASP1-201ENST00000407852 552 ntBASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SENP3-EIF4A1A0A087X0R7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms