Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RN7SKP244-201ENST00000516513 307 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 RNA5SP392-201ENST00000516905 112 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.58□□□□□ -1.68
VPS4BO75351 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4BO75351 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4BO75351 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4BO75351 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4BO75351 ZNF519P2-201ENST00000557032 169 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 AL121834.1-201ENST00000572284 509 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 MIR4504-201ENST00000577413 92 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4BO75351 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4BO75351 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS4BO75351 AC090578.1-201ENST00000604955 591 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS4BO75351 AP001506.1-201ENST00000615444 211 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4BO75351 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS4BO75351 AC099654.13-201ENST00000639774 207 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4BO75351 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
VPS4BO75351 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS4BO75351 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
VPS4BO75351 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
VPS4BO75351 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS4BO75351 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
VPS4BO75351 AL592148.3-201ENST00000608771 2646 ntBASIC4.58□□□□□ -1.68
VPS4BO75351 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS4BO75351 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS4BO75351 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.57□□□□□ -1.68
VPS4BO75351 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS4BO75351 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 OR52B1P-201ENST00000316506 909 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RNY4P24-201ENST00000362735 96 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RNU6-289P-201ENST00000364093 107 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RNU6-343P-201ENST00000364709 104 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
VPS4BO75351 AC019155.1-201ENST00000382242 574 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AL590762.2-201ENST00000395798 571 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS4BO75351 MTND1P21-201ENST00000412991 285 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AL358176.3-201ENST00000420757 454 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 PDSS1P1-201ENST00000422953 1114 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS4BO75351 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS4BO75351 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS4BO75351 PAXBP1P1-201ENST00000449315 447 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AL590365.1-201ENST00000450788 243 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 BTF3P5-201ENST00000457252 467 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 PPIAP21-201ENST00000464473 501 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS4BO75351 STMN1P2-201ENST00000508435 439 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AF131216.2-201ENST00000512316 564 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RN7SKP122-201ENST00000515923 296 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RNU6-1003P-201ENST00000517099 105 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS4BO75351 AC022882.1-201ENST00000532142 501 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS4BO75351 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS4BO75351 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS4BO75351 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS4BO75351 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS4BO75351 MIR5699-201ENST00000578903 90 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS4BO75351 OR4G1P-201ENST00000588632 938 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RPL7P50-201ENST00000600588 727 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 RPL23AP92-201ENST00000603609 255 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AC007497.1-201ENST00000610421 561 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
VPS4BO75351 AC068831.8-201ENST00000620171 435 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 AL139089.1-201ENST00000620372 975 ntBASIC4.57□□□□□ -1.68
VPS4BO75351 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS4BO75351 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
VPS4BO75351 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
VPS4BO75351 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
VPS4BO75351 ELL2P4-201ENST00000446870 1376 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS4BO75351 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
VPS4BO75351 ERCC6-202ENST00000374127 1782 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 AL122126.1-201ENST00000546905 1318 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS4BO75351 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
VPS4BO75351 RN7SKP226-201ENST00000364912 300 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 RNU6-1283P-201ENST00000365314 105 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS4BO75351 RNU6-533P-201ENST00000384144 107 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 HDGFP1-201ENST00000405943 252 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 RN7SKP100-201ENST00000411258 284 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 RPS3AP3-201ENST00000411933 242 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.56□□□□□ -1.68
VPS4BO75351 HMGB3P23-201ENST00000414981 585 ntBASIC4.56□□□□□ -1.68
VPS4BO75351 RPL12P34-201ENST00000424532 479 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms