RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 AEBP2Q6ZN18 517 aaPredicted RBP21.55■■□□□ 1.04
HMGB3P23-201ENST00000414981 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
HMGB3P23-201ENST00000414981 PHF23Q9BUL5 403 aaPredicted RBP18.41■□□□□ 0.54
HMGB3P23-201ENST00000414981 SENP3Q9H4L4 574 aaPredicted RBP18.35■□□□□ 0.53
HMGB3P23-201ENST00000414981 FOXD1Q16676 465 aa17.02■□□□□ 0.32
HMGB3P23-201ENST00000414981 PLPPR3Q6T4P5 718 aa16.98■□□□□ 0.31
HMGB3P23-201ENST00000414981 PPP6R1Q9UPN7 881 aa16.28■□□□□ 0.2
HMGB3P23-201ENST00000414981 ADRA2BP18089 450 aa16.24■□□□□ 0.19
HMGB3P23-201ENST00000414981 PIAS4Q8N2W9 510 aaPredicted RBP15.99■□□□□ 0.15
HMGB3P23-201ENST00000414981 MSH5O43196 834 aa15.79■□□□□ 0.12
HMGB3P23-201ENST00000414981 SCAF1Q9H7N4 1312 aaKnown RBP14.94□□□□□ -0.02
HMGB3P23-201ENST00000414981 PPP4R3CPQ6ZMV5 832 aa14.93□□□□□ -0.02
HMGB3P23-201ENST00000414981 MAPK8IP2Q13387 824 aaPredicted RBP14.78□□□□□ -0.04
HMGB3P23-201ENST00000414981 DMRT2Q9Y5R5 561 aa14.63□□□□□ -0.07
HMGB3P23-201ENST00000414981 CNKSR2Q8WXI2 1034 aa14.57□□□□□ -0.08
HMGB3P23-201ENST00000414981 POTEDQ86YR6 584 aa14.56□□□□□ -0.08
HMGB3P23-201ENST00000414981 NCBP3Q53F19 620 aaKnown RBP14.53□□□□□ -0.08
HMGB3P23-201ENST00000414981 KCNA4P22459 653 aa14.39□□□□□ -0.11
HMGB3P23-201ENST00000414981 RNF216Q9NWF9 866 aaPredicted RBP14.32□□□□□ -0.12
HMGB3P23-201ENST00000414981 HOXD11P31277 338 aaPredicted RBP14.29□□□□□ -0.12
HMGB3P23-201ENST00000414981 NPM3O75607 178 aaKnown RBP14.27□□□□□ -0.13
HMGB3P23-201ENST00000414981 DNAJC5BQ9UF47 199 aa13.99□□□□□ -0.17
HMGB3P23-201ENST00000414981 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
HMGB3P23-201ENST00000414981 SLC4A1APQ9BWU0 796 aaKnown RBP13.7□□□□□ -0.22
HMGB3P23-201ENST00000414981 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.59□□□□□ -0.23
HMGB3P23-201ENST00000414981 SLC4A2P04920 1241 aa13.51□□□□□ -0.25
HMGB3P23-201ENST00000414981 RNF39Q9H2S5 420 aa13.5□□□□□ -0.25
HMGB3P23-201ENST00000414981 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
HMGB3P23-201ENST00000414981 U3KPZ7 1027 aaPredicted RBP13.33□□□□□ -0.28
HMGB3P23-201ENST00000414981 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
HMGB3P23-201ENST00000414981 CACNB1Q02641 598 aaPredicted RBP13.23□□□□□ -0.29
HMGB3P23-201ENST00000414981 ZBTB22O15209 634 aa13.22□□□□□ -0.29
HMGB3P23-201ENST00000414981 MYCNP04198 464 aaPredicted RBP13.21□□□□□ -0.29
HMGB3P23-201ENST00000414981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.2□□□□□ -0.3
HMGB3P23-201ENST00000414981 HNRNPUL2Q1KMD3 747 aaKnown RBP13.2□□□□□ -0.3
HMGB3P23-201ENST00000414981 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
HMGB3P23-201ENST00000414981 APLP2Q06481 763 aa13.09□□□□□ -0.31
HMGB3P23-201ENST00000414981 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
HMGB3P23-201ENST00000414981 EHMT2Q96KQ7 1210 aa13.08□□□□□ -0.32
HMGB3P23-201ENST00000414981 SPINK5Q9NQ38 1064 aaPredicted RBP12.98□□□□□ -0.33
HMGB3P23-201ENST00000414981 CAPN15O75808 1086 aa12.95□□□□□ -0.34
HMGB3P23-201ENST00000414981 ATXN8OSP0DMR3 200 aa12.93□□□□□ -0.34
HMGB3P23-201ENST00000414981 ZNF219Q9P2Y4 722 aaPredicted RBP12.89□□□□□ -0.35
HMGB3P23-201ENST00000414981 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
HMGB3P23-201ENST00000414981 ATF5Q9Y2D1 282 aaPredicted RBP12.82□□□□□ -0.36
HMGB3P23-201ENST00000414981 DSG3P32926 999 aa12.8□□□□□ -0.36
HMGB3P23-201ENST00000414981 ABCB7O75027 752 aa12.65□□□□□ -0.38
HMGB3P23-201ENST00000414981 POLA2Q14181 598 aa12.65□□□□□ -0.38
HMGB3P23-201ENST00000414981 ZBTB12Q9Y330 459 aaPredicted RBP12.46□□□□□ -0.41
HMGB3P23-201ENST00000414981 FBLN2P98095 1184 aa12.33□□□□□ -0.44
HMGB3P23-201ENST00000414981 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
HMGB3P23-201ENST00000414981 RBM42Q9BTD8 480 aaKnown RBP12.22□□□□□ -0.45
HMGB3P23-201ENST00000414981 OSCARQ8IYS5 282 aa12.16□□□□□ -0.46
HMGB3P23-201ENST00000414981 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
HMGB3P23-201ENST00000414981 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
HMGB3P23-201ENST00000414981 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
HMGB3P23-201ENST00000414981 AKT1S1Q96B36 256 aa12.05□□□□□ -0.48
HMGB3P23-201ENST00000414981 ZNF692Q9BU19 519 aaPredicted RBP12.03□□□□□ -0.48
HMGB3P23-201ENST00000414981 SSUH2Q9Y2M2 353 aa11.98□□□□□ -0.49
HMGB3P23-201ENST00000414981 SPDYE4A6NLX3 237 aa11.95□□□□□ -0.5
HMGB3P23-201ENST00000414981 REM2Q8IYK8 340 aaPredicted RBP11.9□□□□□ -0.5
HMGB3P23-201ENST00000414981 PABPN1Q86U42 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
HMGB3P23-201ENST00000414981 FKBP8Q14318 412 aa11.8□□□□□ -0.52
HMGB3P23-201ENST00000414981 SPDYE1Q8NFV5 336 aaPredicted RBP11.78□□□□□ -0.52
HMGB3P23-201ENST00000414981 PROM2Q8N271 834 aa11.76□□□□□ -0.53
HMGB3P23-201ENST00000414981 PITPNM1O00562 1244 aa11.74□□□□□ -0.53
HMGB3P23-201ENST00000414981 CHRDL2Q6WN34 429 aa11.73□□□□□ -0.53
HMGB3P23-201ENST00000414981 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
HMGB3P23-201ENST00000414981 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
HMGB3P23-201ENST00000414981 PRR29P0C7W0 189 aa11.61□□□□□ -0.55
HMGB3P23-201ENST00000414981 FXR2P51116 673 aaKnown RBP eCLIP11.6□□□□□ -0.55
HMGB3P23-201ENST00000414981 PIP4P2Q8N4L2 257 aa11.55□□□□□ -0.56
HMGB3P23-201ENST00000414981 POTEHQ6S545 545 aa11.51□□□□□ -0.57
HMGB3P23-201ENST00000414981 FBXO3Q9UK99 471 aa11.5□□□□□ -0.57
HMGB3P23-201ENST00000414981 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
HMGB3P23-201ENST00000414981 CREBZFQ9NS37 354 aa11.41□□□□□ -0.58
HMGB3P23-201ENST00000414981 CHADLQ6NUI6 762 aa11.39□□□□□ -0.59
HMGB3P23-201ENST00000414981 MIER1Q8N108 512 aa11.36□□□□□ -0.59
HMGB3P23-201ENST00000414981 PLEKHG5O94827 1062 aa11.33□□□□□ -0.6
HMGB3P23-201ENST00000414981 FARP1Q9Y4F1 1045 aaPredicted RBP11.33□□□□□ -0.6
HMGB3P23-201ENST00000414981 PLCD3Q8N3E9 789 aa11.31□□□□□ -0.6
HMGB3P23-201ENST00000414981 MNX1P50219 401 aaPredicted RBP11.28□□□□□ -0.6
HMGB3P23-201ENST00000414981 VASPP50552 380 aaPredicted RBP11.28□□□□□ -0.6
HMGB3P23-201ENST00000414981 NPM1P06748 294 aaKnown RBP eCLIP11.26□□□□□ -0.61
HMGB3P23-201ENST00000414981 ZBTB47Q9UFB7 747 aaPredicted RBP11.24□□□□□ -0.61
HMGB3P23-201ENST00000414981 HAX1O00165 279 aa11.22□□□□□ -0.61
HMGB3P23-201ENST00000414981 C19orf67A6NJJ6 358 aa11.2□□□□□ -0.62
HMGB3P23-201ENST00000414981 IFNLR1Q8IU57 520 aaPredicted RBP11.13□□□□□ -0.63
HMGB3P23-201ENST00000414981 KLHL34Q8N239 644 aa11.13□□□□□ -0.63
HMGB3P23-201ENST00000414981 CD44P16070 742 aaKnown RBP11.11□□□□□ -0.63
HMGB3P23-201ENST00000414981 EVX2Q03828 476 aa11.1□□□□□ -0.63
HMGB3P23-201ENST00000414981 NUBP1P53384 320 aa11.08□□□□□ -0.64
HMGB3P23-201ENST00000414981 PAK3O75914 559 aaPredicted RBP11.06□□□□□ -0.64
HMGB3P23-201ENST00000414981 SPOCK2Q92563 424 aa11.04□□□□□ -0.64
HMGB3P23-201ENST00000414981 RASEFQ8IZ41 740 aa11.03□□□□□ -0.64
HMGB3P23-201ENST00000414981 ZRANB1Q9UGI0 708 aa11.03□□□□□ -0.64
HMGB3P23-201ENST00000414981 SP7Q8TDD2 431 aaPredicted RBP11.02□□□□□ -0.65
HMGB3P23-201ENST00000414981 CLCN6P51797 869 aa11.01□□□□□ -0.65
HMGB3P23-201ENST00000414981 TSPYL2Q9H2G4 693 aaPredicted RBP11□□□□□ -0.65
HMGB3P23-201ENST00000414981 ZNF579Q8NAF0 562 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms