RNA–Protein interactions for RNA: ENST00000531858.1

AC055878.1-201, humanhuman

TSL 3 BASIC

Gene AC055878.1, Length 281 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC055878.1-201ENST00000531858 AEBP2Q6ZN18 517 aaPredicted RBP17.42■□□□□ 0.38
AC055878.1-201ENST00000531858 CHIC1Q5VXU3 224 aa16.38■□□□□ 0.21
AC055878.1-201ENST00000531858 SENP3Q9H4L4 574 aaPredicted RBP15.03■□□□□ -0
AC055878.1-201ENST00000531858 PHF23Q9BUL5 403 aaPredicted RBP14.72□□□□□ -0.05
AC055878.1-201ENST00000531858 FOXD1Q16676 465 aa13.99□□□□□ -0.17
AC055878.1-201ENST00000531858 POTEDQ86YR6 584 aa13.74□□□□□ -0.21
AC055878.1-201ENST00000531858 MSH5O43196 834 aa13.35□□□□□ -0.27
AC055878.1-201ENST00000531858 PIAS4Q8N2W9 510 aaPredicted RBP13.02□□□□□ -0.33
AC055878.1-201ENST00000531858 PLPPR3Q6T4P5 718 aa12.75□□□□□ -0.37
AC055878.1-201ENST00000531858 PPP6R1Q9UPN7 881 aa12.71□□□□□ -0.37
AC055878.1-201ENST00000531858 ADRA2BP18089 450 aa12.66□□□□□ -0.38
AC055878.1-201ENST00000531858 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
AC055878.1-201ENST00000531858 MAPK8IP2Q13387 824 aaPredicted RBP11.75□□□□□ -0.53
AC055878.1-201ENST00000531858 CACNB1Q02641 598 aaPredicted RBP11.72□□□□□ -0.53
AC055878.1-201ENST00000531858 SCAF1Q9H7N4 1312 aaKnown RBP11.68□□□□□ -0.54
AC055878.1-201ENST00000531858 DCAF8L1A6NGE4 600 aa11.4□□□□□ -0.58
AC055878.1-201ENST00000531858 RNF39Q9H2S5 420 aa11.31□□□□□ -0.6
AC055878.1-201ENST00000531858 HOXD11P31277 338 aaPredicted RBP11.19□□□□□ -0.62
AC055878.1-201ENST00000531858 C1QBPQ07021 282 aaKnown RBP11.15□□□□□ -0.62
AC055878.1-201ENST00000531858 PPP4R3CPQ6ZMV5 832 aa11.08□□□□□ -0.64
AC055878.1-201ENST00000531858 RNF216Q9NWF9 866 aaPredicted RBP11.01□□□□□ -0.65
AC055878.1-201ENST00000531858 CNKSR2Q8WXI2 1034 aa10.99□□□□□ -0.65
AC055878.1-201ENST00000531858 DNAJC5BQ9UF47 199 aa10.93□□□□□ -0.66
AC055878.1-201ENST00000531858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.72□□□□□ -0.69
AC055878.1-201ENST00000531858 POTEHQ6S545 545 aa10.71□□□□□ -0.69
AC055878.1-201ENST00000531858 EHMT2Q96KQ7 1210 aa10.7□□□□□ -0.7
AC055878.1-201ENST00000531858 NCBP3Q53F19 620 aaKnown RBP10.58□□□□□ -0.72
AC055878.1-201ENST00000531858 KCNA4P22459 653 aa10.51□□□□□ -0.73
AC055878.1-201ENST00000531858 CAPN15O75808 1086 aa10.42□□□□□ -0.74
AC055878.1-201ENST00000531858 DSG3P32926 999 aa10.42□□□□□ -0.74
AC055878.1-201ENST00000531858 U3KPZ7 1027 aaPredicted RBP10.38□□□□□ -0.75
AC055878.1-201ENST00000531858 NPM3O75607 178 aaKnown RBP10.36□□□□□ -0.75
AC055878.1-201ENST00000531858 SPINK5Q9NQ38 1064 aaPredicted RBP10.36□□□□□ -0.75
AC055878.1-201ENST00000531858 CSRNP3Q8WYN3 585 aa10.29□□□□□ -0.76
AC055878.1-201ENST00000531858 SLC4A1APQ9BWU0 796 aaKnown RBP10.21□□□□□ -0.77
AC055878.1-201ENST00000531858 APLP2Q06481 763 aa10.17□□□□□ -0.78
AC055878.1-201ENST00000531858 SLC24A1O60721 1099 aa10.16□□□□□ -0.78
AC055878.1-201ENST00000531858 TRHP20396 242 aaPredicted RBP10.14□□□□□ -0.79
AC055878.1-201ENST00000531858 ZNF219Q9P2Y4 722 aaPredicted RBP10.13□□□□□ -0.79
AC055878.1-201ENST00000531858 ABCB7O75027 752 aa10.12□□□□□ -0.79
AC055878.1-201ENST00000531858 RBM42Q9BTD8 480 aaKnown RBP10.04□□□□□ -0.8
AC055878.1-201ENST00000531858 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.02□□□□□ -0.81
AC055878.1-201ENST00000531858 HNRNPUL2Q1KMD3 747 aaKnown RBP10.02□□□□□ -0.81
AC055878.1-201ENST00000531858 SLC4A2P04920 1241 aa9.98□□□□□ -0.81
AC055878.1-201ENST00000531858 CHRDL2Q6WN34 429 aa9.95□□□□□ -0.82
AC055878.1-201ENST00000531858 SAMD1Q6SPF0 538 aaPredicted RBP9.93□□□□□ -0.82
AC055878.1-201ENST00000531858 AMER1Q5JTC6 1135 aaPredicted RBP9.91□□□□□ -0.82
AC055878.1-201ENST00000531858 SP7Q8TDD2 431 aaPredicted RBP9.83□□□□□ -0.84
AC055878.1-201ENST00000531858 RTN4Q9NQC3 1192 aaKnown RBP9.77□□□□□ -0.85
AC055878.1-201ENST00000531858 POLA2Q14181 598 aa9.74□□□□□ -0.85
AC055878.1-201ENST00000531858 AKT1S1Q96B36 256 aa9.68□□□□□ -0.86
AC055878.1-201ENST00000531858 ZBTB22O15209 634 aa9.66□□□□□ -0.86
AC055878.1-201ENST00000531858 MYCNP04198 464 aaPredicted RBP9.63□□□□□ -0.87
AC055878.1-201ENST00000531858 PIP4P2Q8N4L2 257 aa9.6□□□□□ -0.87
AC055878.1-201ENST00000531858 ZBTB12Q9Y330 459 aaPredicted RBP9.59□□□□□ -0.87
AC055878.1-201ENST00000531858 HAX1O00165 279 aa9.58□□□□□ -0.88
AC055878.1-201ENST00000531858 REM2Q8IYK8 340 aaPredicted RBP9.56□□□□□ -0.88
AC055878.1-201ENST00000531858 FOXD4L1Q9NU39 408 aa9.55□□□□□ -0.88
AC055878.1-201ENST00000531858 PITPNM1O00562 1244 aa9.47□□□□□ -0.89
AC055878.1-201ENST00000531858 FXR2P51116 673 aaKnown RBP eCLIP9.46□□□□□ -0.9
AC055878.1-201ENST00000531858 OSCARQ8IYS5 282 aa9.46□□□□□ -0.9
AC055878.1-201ENST00000531858 ATF5Q9Y2D1 282 aaPredicted RBP9.37□□□□□ -0.91
AC055878.1-201ENST00000531858 EVX2Q03828 476 aa9.33□□□□□ -0.92
AC055878.1-201ENST00000531858 ATXN8OSP0DMR3 200 aa9.24□□□□□ -0.93
AC055878.1-201ENST00000531858 FKBP8Q14318 412 aa9.24□□□□□ -0.93
AC055878.1-201ENST00000531858 PRKAR2AP13861 404 aaKnown RBP9.23□□□□□ -0.93
AC055878.1-201ENST00000531858 SPDYE2BA6NHP3 402 aa9.21□□□□□ -0.94
AC055878.1-201ENST00000531858 SPDYE6P0CI01 402 aa9.21□□□□□ -0.94
AC055878.1-201ENST00000531858 SPDYE2Q495Y8 402 aa9.21□□□□□ -0.94
AC055878.1-201ENST00000531858 LHX8Q68G74 356 aa9.2□□□□□ -0.94
AC055878.1-201ENST00000531858 C19orf67A6NJJ6 358 aa9.18□□□□□ -0.94
AC055878.1-201ENST00000531858 SPDYE1Q8NFV5 336 aaPredicted RBP9.17□□□□□ -0.94
AC055878.1-201ENST00000531858 CLEC11AQ9Y240 323 aa9.17□□□□□ -0.94
AC055878.1-201ENST00000531858 GABBR2O75899 941 aa9.15□□□□□ -0.94
AC055878.1-201ENST00000531858 FBLN2P98095 1184 aa9.14□□□□□ -0.95
AC055878.1-201ENST00000531858 PLCB2Q00722 1185 aa9.05□□□□□ -0.96
AC055878.1-201ENST00000531858 ZNF692Q9BU19 519 aaPredicted RBP9.03□□□□□ -0.96
AC055878.1-201ENST00000531858 PLSCR2Q9NRY7 297 aa9.02□□□□□ -0.97
AC055878.1-201ENST00000531858 SSUH2Q9Y2M2 353 aa9.01□□□□□ -0.97
AC055878.1-201ENST00000531858 CHADLQ6NUI6 762 aa9□□□□□ -0.97
AC055878.1-201ENST00000531858 BCANQ96GW7 911 aa9□□□□□ -0.97
AC055878.1-201ENST00000531858 PRR29P0C7W0 189 aa8.95□□□□□ -0.98
AC055878.1-201ENST00000531858 MKRN4PQ13434 485 aaPredicted RBP8.93□□□□□ -0.98
AC055878.1-201ENST00000531858 POTEIP0CG38 1075 aa8.92□□□□□ -0.98
AC055878.1-201ENST00000531858 CD44P16070 742 aaKnown RBP8.92□□□□□ -0.98
AC055878.1-201ENST00000531858 CLCN6P51797 869 aa8.92□□□□□ -0.98
AC055878.1-201ENST00000531858 VSIG10Q8N0Z9 540 aa8.87□□□□□ -0.99
AC055878.1-201ENST00000531858 DCBLD2Q96PD2 775 aa8.87□□□□□ -0.99
AC055878.1-201ENST00000531858 PABPN1Q86U42 306 aaKnown RBP eCLIP8.86□□□□□ -0.99
AC055878.1-201ENST00000531858 FBXO3Q9UK99 471 aa8.86□□□□□ -0.99
AC055878.1-201ENST00000531858 TAOK2Q9UL54 1235 aa8.86□□□□□ -0.99
AC055878.1-201ENST00000531858 HAP1P54257 671 aaPredicted RBP8.84□□□□□ -0.99
AC055878.1-201ENST00000531858 FARP1Q9Y4F1 1045 aaPredicted RBP8.84□□□□□ -0.99
AC055878.1-201ENST00000531858 PRKCSHP14314 528 aaPredicted RBP8.76□□□□□ -1.01
AC055878.1-201ENST00000531858 ZNF579Q8NAF0 562 aaKnown RBP8.75□□□□□ -1.01
AC055878.1-201ENST00000531858 ZRANB1Q9UGI0 708 aa8.72□□□□□ -1.01
AC055878.1-201ENST00000531858 OTUD5Q96G74 571 aa8.7□□□□□ -1.02
AC055878.1-201ENST00000531858 POTEMA6NI47 508 aa8.69□□□□□ -1.02
AC055878.1-201ENST00000531858 POTEGQ6S5H5 508 aa8.66□□□□□ -1.02
AC055878.1-201ENST00000531858 GALR2O43603 387 aaPredicted RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms