Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDHB3Q9Y5E6 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDHB3Q9Y5E6 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PCDHB3Q9Y5E6 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDHB3Q9Y5E6 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
PCDHB3Q9Y5E6 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 AL353708.3-201ENST00000610272 989 ntBASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHB3Q9Y5E6 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 AP003071.4-201ENST00000562276 1284 ntBASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 AC073195.1-201ENST00000607241 877 ntBASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.8■□□□□ 0.6
PCDHB3Q9Y5E6 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 CD177P1-201ENST00000606252 935 ntBASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 AC116351.2-201ENST00000606540 1585 ntBASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHB3Q9Y5E6 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 AC093503.3-201ENST00000624917 2352 ntBASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PCDHB3Q9Y5E6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms