Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 SLC25A1P4-201ENST00000567977 778 ntBASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NOTCH3Q9UM47 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 CYGB-204ENST00000589342 815 ntTSL 3 BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NOTCH3Q9UM47 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 HCG4P8-203ENST00000443049 980 ntBASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 YBX1P10-201ENST00000444752 975 ntBASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
NOTCH3Q9UM47 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 AC092647.4-201ENST00000457211 535 ntBASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NOTCH3Q9UM47 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms