Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 TEX21P-204ENST00000641479 1693 ntBASIC18.22■□□□□ 0.51
SCN3AQ9NY46 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 AC004980.1-204ENST00000429707 299 ntBASIC18.22■□□□□ 0.51
SCN3AQ9NY46 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN3AQ9NY46 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 AC005332.7-201ENST00000614046 2005 ntBASIC18.21■□□□□ 0.51
SCN3AQ9NY46 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 BX088651.1-201ENST00000540551 451 ntBASIC18.21■□□□□ 0.51
SCN3AQ9NY46 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN3AQ9NY46 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
SCN3AQ9NY46 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SCN3AQ9NY46 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MESTP1-201ENST00000404287 994 ntBASIC18.2■□□□□ 0.5
SCN3AQ9NY46 RBM17P1-201ENST00000453646 1190 ntBASIC18.2■□□□□ 0.5
SCN3AQ9NY46 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SCN3AQ9NY46 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN3AQ9NY46 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN3AQ9NY46 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN3AQ9NY46 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN3AQ9NY46 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN3AQ9NY46 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.18■□□□□ 0.5
SCN3AQ9NY46 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms