Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 STARP1-201ENST00000397973 869 ntBASIC21.53■■□□□ 1.04
VTA1Q9NP79 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 AC005332.1-201ENST00000577698 1310 ntBASIC21.53■■□□□ 1.04
VTA1Q9NP79 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 PKD1P6-201ENST00000343738 4769 ntBASIC21.52■■□□□ 1.04
VTA1Q9NP79 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.52■■□□□ 1.04
VTA1Q9NP79 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.52■■□□□ 1.04
VTA1Q9NP79 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 GCSHP2-201ENST00000560971 527 ntBASIC21.52■■□□□ 1.04
VTA1Q9NP79 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.52■■□□□ 1.04
VTA1Q9NP79 AC116407.4-201ENST00000623319 1061 ntBASIC21.52■■□□□ 1.04
VTA1Q9NP79 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VTA1Q9NP79 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VTA1Q9NP79 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.52■■□□□ 1.03
VTA1Q9NP79 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
VTA1Q9NP79 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VTA1Q9NP79 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VTA1Q9NP79 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
VTA1Q9NP79 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VTA1Q9NP79 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 AL136038.3-201ENST00000561909 1096 ntBASIC21.51■■□□□ 1.03
VTA1Q9NP79 CR769767.2-201ENST00000622735 460 ntBASIC21.51■■□□□ 1.03
VTA1Q9NP79 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VTA1Q9NP79 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
VTA1Q9NP79 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.51■■□□□ 1.03
VTA1Q9NP79 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VTA1Q9NP79 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 AC112907.2-201ENST00000448639 330 ntBASIC21.5■■□□□ 1.03
VTA1Q9NP79 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VTA1Q9NP79 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VTA1Q9NP79 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VTA1Q9NP79 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VTA1Q9NP79 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VTA1Q9NP79 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 KRT18P56-201ENST00000507275 550 ntBASIC21.49■■□□□ 1.03
VTA1Q9NP79 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 AC083849.1-201ENST00000615227 514 ntBASIC21.49■■□□□ 1.03
VTA1Q9NP79 HYMAI.1-201ENST00000620949 238 ntBASIC21.49■■□□□ 1.03
VTA1Q9NP79 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VTA1Q9NP79 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VTA1Q9NP79 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VTA1Q9NP79 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
VTA1Q9NP79 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VTA1Q9NP79 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VTA1Q9NP79 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VTA1Q9NP79 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VTA1Q9NP79 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
VTA1Q9NP79 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VTA1Q9NP79 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
VTA1Q9NP79 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.48■■□□□ 1.03
VTA1Q9NP79 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.48■■□□□ 1.03
VTA1Q9NP79 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms