Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 AL032819.2-201ENST00000624543 2162 ntBASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 AC023632.3-201ENST00000521633 145 ntBASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 OR10C1-204ENST00000622521 1039 ntBASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.52■□□□□ 0.24
CHMP1AQ9HD42 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.52■□□□□ 0.23
CHMP1AQ9HD42 NFIC-211ENST00000641145 8399 ntBASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 AC010980.2-201ENST00000587099 1412 ntBASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms