Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VMP1Q96GC9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
VMP1Q96GC9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 AC093503.3-201ENST00000624917 2352 ntBASIC18.38■□□□□ 0.53
VMP1Q96GC9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 AC018553.1-201ENST00000616682 1458 ntBASIC18.38■□□□□ 0.53
VMP1Q96GC9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.38■□□□□ 0.53
VMP1Q96GC9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VMP1Q96GC9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 AC093827.2-201ENST00000512654 315 ntBASIC18.37■□□□□ 0.53
VMP1Q96GC9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 AC004264.1-201ENST00000608354 794 ntBASIC18.37■□□□□ 0.53
VMP1Q96GC9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VMP1Q96GC9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VMP1Q96GC9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VMP1Q96GC9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VMP1Q96GC9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 TFP1-202ENST00000475455 1573 ntBASIC18.35■□□□□ 0.53
VMP1Q96GC9 AP006587.1-201ENST00000534129 1502 ntBASIC18.35■□□□□ 0.53
VMP1Q96GC9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms