Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 CYP2D8P-201ENST00000433633 1490 ntBASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 AC093484.2-201ENST00000580996 2166 ntBASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.26■□□□□ 0.67
ECHDC3Q96DC8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 AC010947.1-201ENST00000623454 693 ntBASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 AC097493.4-201ENST00000641197 219 ntBASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ECHDC3Q96DC8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 TEX21P-204ENST00000641479 1693 ntBASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ECHDC3Q96DC8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 AC211429.1-201ENST00000415277 523 ntBASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ECHDC3Q96DC8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 NAPSB-206ENST00000562112 1266 ntBASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ECHDC3Q96DC8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms