Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC25.1■■□□□ 1.61
RTF1Q92541 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.1■■□□□ 1.61
RTF1Q92541 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC25.1■■□□□ 1.61
RTF1Q92541 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC25.1■■□□□ 1.61
RTF1Q92541 SDHAP1-207ENST00000440850 2000 ntBASIC25.1■■□□□ 1.61
RTF1Q92541 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
RTF1Q92541 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC25.09■■□□□ 1.61
RTF1Q92541 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC25.09■■□□□ 1.61
RTF1Q92541 PWWP2AP1-201ENST00000429776 2273 ntBASIC25.09■■□□□ 1.61
RTF1Q92541 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC25.09■■□□□ 1.61
RTF1Q92541 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC25.09■■□□□ 1.61
RTF1Q92541 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 AL049597.2-201ENST00000565575 961 ntBASIC25.09■■□□□ 1.61
RTF1Q92541 AL353719.1-201ENST00000566847 864 ntBASIC25.09■■□□□ 1.61
RTF1Q92541 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC25.09■■□□□ 1.61
RTF1Q92541 ME2-218ENST00000640965 2476 ntTSL 5 BASIC25.09■■□□□ 1.61
RTF1Q92541 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC25.09■■□□□ 1.61
RTF1Q92541 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RTF1Q92541 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC25.08■■□□□ 1.61
RTF1Q92541 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC25.08■■□□□ 1.61
RTF1Q92541 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC25.08■■□□□ 1.61
RTF1Q92541 GPX4-207ENST00000589115 812 ntTSL 2 BASIC25.08■■□□□ 1.61
RTF1Q92541 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.08■■□□□ 1.61
RTF1Q92541 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC25.08■■□□□ 1.61
RTF1Q92541 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTF1Q92541 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC25.08■■□□□ 1.6
RTF1Q92541 LGALS8-AS1-201ENST00000487567 1457 ntBASIC25.08■■□□□ 1.6
RTF1Q92541 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
RTF1Q92541 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
RTF1Q92541 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
RTF1Q92541 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC25.08■■□□□ 1.6
RTF1Q92541 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
RTF1Q92541 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
RTF1Q92541 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC25.07■■□□□ 1.6
RTF1Q92541 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC25.07■■□□□ 1.6
RTF1Q92541 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
RTF1Q92541 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RTF1Q92541 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC25.06■■□□□ 1.6
RTF1Q92541 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC25.06■■□□□ 1.6
RTF1Q92541 TREX1-205ENST00000625293 1783 ntBASIC25.06■■□□□ 1.6
RTF1Q92541 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC25.06■■□□□ 1.6
RTF1Q92541 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC25.06■■□□□ 1.6
RTF1Q92541 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC25.06■■□□□ 1.6
RTF1Q92541 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
RTF1Q92541 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC25.06■■□□□ 1.6
RTF1Q92541 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
RTF1Q92541 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC25.06■■□□□ 1.6
RTF1Q92541 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTF1Q92541 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTF1Q92541 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTF1Q92541 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTF1Q92541 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTF1Q92541 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.05■■□□□ 1.6
RTF1Q92541 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTF1Q92541 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC25.05■■□□□ 1.6
RTF1Q92541 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
RTF1Q92541 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC25.05■■□□□ 1.6
RTF1Q92541 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
RTF1Q92541 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms