Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 LINC01006-201ENST00000333319 2292 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 UNC93B2-201ENST00000285383 730 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ATP5G1P1-201ENST00000448724 379 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 RMI2-205ENST00000576027 818 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AL121906.2-201ENST00000621597 723 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 Z85996.1-201ENST00000494644 937 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 KRT126P-201ENST00000549467 1181 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 METTL23-204ENST00000586752 904 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 FAM87A-204ENST00000613235 858 ntBASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 STK25-204ENST00000405585 1643 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 ISCU-203ENST00000431221 799 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC5.92□□□□□ -1.46
SYNE1Q8NF91 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PARN-205ENST00000539279 1557 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 KRT18P48-201ENST00000434763 852 ntBASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC5.91□□□□□ -1.46
SYNE1Q8NF91 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms