Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 VENTXP5-201ENST00000523979 775 ntBASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC25.37■■□□□ 1.65
USHBP1Q8N6Y0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 KRT18P48-201ENST00000434763 852 ntBASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 KRT126P-201ENST00000549467 1181 ntBASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USHBP1Q8N6Y0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 TSPY23P-201ENST00000440136 739 ntBASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 CR769767.2-201ENST00000622735 460 ntBASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USHBP1Q8N6Y0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 ZNF815P-204ENST00000434898 1737 ntBASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 SPDYE13P-201ENST00000445314 798 ntBASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USHBP1Q8N6Y0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 HCG4P8-203ENST00000443049 980 ntBASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USHBP1Q8N6Y0 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
USHBP1Q8N6Y0 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC25.33■■□□□ 1.64
USHBP1Q8N6Y0 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.64
USHBP1Q8N6Y0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.64
USHBP1Q8N6Y0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
USHBP1Q8N6Y0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms