Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 AL161938.1-201ENST00000569833 2180 ntBASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 AC004408.2-201ENST00000623613 2777 ntBASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC40Q4G0X9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC40Q4G0X9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 KRT17P3-201ENST00000420566 1262 ntBASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC40Q4G0X9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 AC026366.1-201ENST00000488803 879 ntBASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 NBPF21P-201ENST00000425093 1451 ntBASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC40Q4G0X9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC40Q4G0X9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms