Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP9P49458 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SRP9P49458 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP9P49458 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP9P49458 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.03■□□□□ 0.32
SRP9P49458 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP9P49458 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SRP9P49458 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP9P49458 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SRP9P49458 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP9P49458 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.03■□□□□ 0.32
SRP9P49458 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SRP9P49458 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.02■□□□□ 0.32
SRP9P49458 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.02■□□□□ 0.32
SRP9P49458 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.02■□□□□ 0.32
SRP9P49458 PNMA6B-201ENST00000538162 1200 ntBASIC17.02■□□□□ 0.32
SRP9P49458 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.02■□□□□ 0.32
SRP9P49458 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP9P49458 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.02■□□□□ 0.32
SRP9P49458 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.02■□□□□ 0.32
SRP9P49458 KRT8P17-201ENST00000453110 1448 ntBASIC17.02■□□□□ 0.31
SRP9P49458 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SRP9P49458 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SRP9P49458 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.02■□□□□ 0.31
SRP9P49458 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SRP9P49458 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SRP9P49458 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP9P49458 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SRP9P49458 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP9P49458 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.01■□□□□ 0.31
SRP9P49458 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP9P49458 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP9P49458 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.01■□□□□ 0.31
SRP9P49458 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP9P49458 AC005829.2-201ENST00000571422 1056 ntBASIC17.01■□□□□ 0.31
SRP9P49458 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP9P49458 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP9P49458 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP9P49458 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP9P49458 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SRP9P49458 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP9P49458 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17■□□□□ 0.31
SRP9P49458 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17■□□□□ 0.31
SRP9P49458 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17■□□□□ 0.31
SRP9P49458 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17■□□□□ 0.31
SRP9P49458 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17■□□□□ 0.31
SRP9P49458 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17■□□□□ 0.31
SRP9P49458 CD99P1-205ENST00000527459 561 ntBASIC17■□□□□ 0.31
SRP9P49458 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SRP9P49458 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17■□□□□ 0.31
SRP9P49458 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms