Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
RFX3P48380 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RFX3P48380 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 NBPF21P-201ENST00000425093 1451 ntBASIC18.06■□□□□ 0.48
RFX3P48380 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.06■□□□□ 0.48
RFX3P48380 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RFX3P48380 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX3P48380 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RFX3P48380 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.05■□□□□ 0.48
RFX3P48380 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX3P48380 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RFX3P48380 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.05■□□□□ 0.48
RFX3P48380 MTDHP1-201ENST00000605323 784 ntBASIC18.05■□□□□ 0.48
RFX3P48380 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.05■□□□□ 0.48
RFX3P48380 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX3P48380 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX3P48380 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX3P48380 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.05■□□□□ 0.48
RFX3P48380 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX3P48380 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RFX3P48380 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX3P48380 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.04■□□□□ 0.48
RFX3P48380 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RFX3P48380 KRT18P29-201ENST00000397031 1267 ntBASIC18.04■□□□□ 0.48
RFX3P48380 TUBB8P6-201ENST00000436895 1288 ntBASIC18.04■□□□□ 0.48
RFX3P48380 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.04■□□□□ 0.48
RFX3P48380 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
RFX3P48380 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.04■□□□□ 0.48
RFX3P48380 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RFX3P48380 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
RFX3P48380 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX3P48380 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX3P48380 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.03■□□□□ 0.48
RFX3P48380 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.03■□□□□ 0.48
RFX3P48380 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
RFX3P48380 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX3P48380 C1QBPP2-201ENST00000528754 825 ntBASIC18.03■□□□□ 0.48
RFX3P48380 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.03■□□□□ 0.48
RFX3P48380 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RFX3P48380 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX3P48380 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.03■□□□□ 0.48
RFX3P48380 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX3P48380 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
RFX3P48380 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RFX3P48380 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RFX3P48380 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RFX3P48380 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
RFX3P48380 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.02■□□□□ 0.48
RFX3P48380 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RFX3P48380 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RFX3P48380 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms