Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL353807.1-201ENST00000427475 662 ntBASIC18.09■□□□□ 0.49
SOX3P41225 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 TSPY7P-201ENST00000431358 1114 ntBASIC18.09■□□□□ 0.49
SOX3P41225 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.09■□□□□ 0.49
SOX3P41225 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX3P41225 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SOX3P41225 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
SOX3P41225 AP001271.2-201ENST00000624018 1556 ntBASIC18.08■□□□□ 0.49
SOX3P41225 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SOX3P41225 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SOX3P41225 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.08■□□□□ 0.49
SOX3P41225 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SOX3P41225 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SOX3P41225 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.08■□□□□ 0.49
SOX3P41225 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX3P41225 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX3P41225 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SOX3P41225 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX3P41225 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.08■□□□□ 0.48
SOX3P41225 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX3P41225 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX3P41225 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
SOX3P41225 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.07■□□□□ 0.48
SOX3P41225 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 AP002982.1-201ENST00000492365 877 ntBASIC18.07■□□□□ 0.48
SOX3P41225 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.07■□□□□ 0.48
SOX3P41225 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.07■□□□□ 0.48
SOX3P41225 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.07■□□□□ 0.48
SOX3P41225 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SOX3P41225 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SOX3P41225 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.07■□□□□ 0.48
SOX3P41225 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX3P41225 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.06■□□□□ 0.48
SOX3P41225 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SOX3P41225 AIRN-201ENST00000601203 4374 ntBASIC18.06■□□□□ 0.48
SOX3P41225 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.06■□□□□ 0.48
SOX3P41225 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SOX3P41225 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.06■□□□□ 0.48
SOX3P41225 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SOX3P41225 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.06■□□□□ 0.48
SOX3P41225 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.06■□□□□ 0.48
SOX3P41225 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 KRT18P16-201ENST00000510337 1294 ntBASIC18.06■□□□□ 0.48
SOX3P41225 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SOX3P41225 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.06■□□□□ 0.48
SOX3P41225 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.06■□□□□ 0.48
SOX3P41225 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms