Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.59■□□□□ 0.41
RFC3P40938 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.59■□□□□ 0.41
RFC3P40938 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.59■□□□□ 0.41
RFC3P40938 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.59■□□□□ 0.41
RFC3P40938 AC092865.7-201ENST00000641832 219 ntBASIC17.59■□□□□ 0.41
RFC3P40938 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFC3P40938 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
RFC3P40938 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.59■□□□□ 0.41
RFC3P40938 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFC3P40938 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFC3P40938 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFC3P40938 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.58■□□□□ 0.41
RFC3P40938 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFC3P40938 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.58■□□□□ 0.41
RFC3P40938 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFC3P40938 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
RFC3P40938 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
RFC3P40938 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.58■□□□□ 0.4
RFC3P40938 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.58■□□□□ 0.4
RFC3P40938 AC010203.1-204ENST00000548782 407 ntBASIC17.58■□□□□ 0.4
RFC3P40938 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.58■□□□□ 0.4
RFC3P40938 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
RFC3P40938 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.58■□□□□ 0.4
RFC3P40938 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.58■□□□□ 0.4
RFC3P40938 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
RFC3P40938 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFC3P40938 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.57■□□□□ 0.4
RFC3P40938 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.57■□□□□ 0.4
RFC3P40938 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.57■□□□□ 0.4
RFC3P40938 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFC3P40938 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RFC3P40938 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.57■□□□□ 0.4
RFC3P40938 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.57■□□□□ 0.4
RFC3P40938 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RFC3P40938 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RFC3P40938 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
RFC3P40938 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.56■□□□□ 0.4
RFC3P40938 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 AL049597.2-201ENST00000565575 961 ntBASIC17.56■□□□□ 0.4
RFC3P40938 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.56■□□□□ 0.4
RFC3P40938 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.56■□□□□ 0.4
RFC3P40938 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.56■□□□□ 0.4
RFC3P40938 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.56■□□□□ 0.4
RFC3P40938 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFC3P40938 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFC3P40938 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFC3P40938 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFC3P40938 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.55■□□□□ 0.4
RFC3P40938 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RFC3P40938 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFC3P40938 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFC3P40938 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.55■□□□□ 0.4
RFC3P40938 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.55■□□□□ 0.4
RFC3P40938 ATP5G1P1-201ENST00000448724 379 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms