Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 AC106820.2-201ENST00000563775 3264 ntBASIC18.35■□□□□ 0.53
MSX2P35548 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.35■□□□□ 0.53
MSX2P35548 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX2P35548 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.35■□□□□ 0.53
MSX2P35548 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 MFSD11-216ENST00000590393 1141 ntBASIC18.35■□□□□ 0.53
MSX2P35548 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX2P35548 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.35■□□□□ 0.53
MSX2P35548 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
MSX2P35548 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
MSX2P35548 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX2P35548 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
MSX2P35548 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.34■□□□□ 0.53
MSX2P35548 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX2P35548 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
MSX2P35548 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
MSX2P35548 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.34■□□□□ 0.53
MSX2P35548 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
MSX2P35548 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 ZNF815P-204ENST00000434898 1737 ntBASIC18.34■□□□□ 0.53
MSX2P35548 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
MSX2P35548 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.34■□□□□ 0.53
MSX2P35548 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSX2P35548 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.33■□□□□ 0.53
MSX2P35548 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
MSX2P35548 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
MSX2P35548 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
MSX2P35548 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.33■□□□□ 0.53
MSX2P35548 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
MSX2P35548 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSX2P35548 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 KRT18P68-201ENST00000392293 1000 ntBASIC18.33■□□□□ 0.52
MSX2P35548 YBX1P1-201ENST00000445822 960 ntBASIC18.33■□□□□ 0.52
MSX2P35548 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.33■□□□□ 0.52
MSX2P35548 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSX2P35548 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MSX2P35548 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.32■□□□□ 0.52
MSX2P35548 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
MSX2P35548 AC090340.1-201ENST00000620778 4980 ntBASIC18.32■□□□□ 0.52
MSX2P35548 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.32■□□□□ 0.52
MSX2P35548 AL139246.5-201ENST00000606645 996 ntBASIC18.32■□□□□ 0.52
MSX2P35548 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MSX2P35548 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
MSX2P35548 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms