Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 AC097493.4-201ENST00000641197 219 ntBASIC21.7■■□□□ 1.06
CIITAP33076 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CIITAP33076 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.7■■□□□ 1.06
CIITAP33076 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
CIITAP33076 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 TEX21P-204ENST00000641479 1693 ntBASIC21.69■■□□□ 1.06
CIITAP33076 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.69■■□□□ 1.06
CIITAP33076 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 AC211429.1-201ENST00000415277 523 ntBASIC21.69■■□□□ 1.06
CIITAP33076 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.69■■□□□ 1.06
CIITAP33076 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CIITAP33076 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CIITAP33076 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.69■■□□□ 1.06
CIITAP33076 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.69■■□□□ 1.06
CIITAP33076 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.69■■□□□ 1.06
CIITAP33076 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.69■■□□□ 1.06
CIITAP33076 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CIITAP33076 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
CIITAP33076 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CIITAP33076 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CIITAP33076 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CIITAP33076 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CIITAP33076 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CIITAP33076 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CIITAP33076 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.68■■□□□ 1.06
CIITAP33076 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.68■■□□□ 1.06
CIITAP33076 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.68■■□□□ 1.06
CIITAP33076 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
CIITAP33076 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.68■■□□□ 1.06
CIITAP33076 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.68■■□□□ 1.06
CIITAP33076 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.68■■□□□ 1.06
CIITAP33076 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CIITAP33076 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.68■■□□□ 1.06
CIITAP33076 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CIITAP33076 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.67■■□□□ 1.06
CIITAP33076 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.67■■□□□ 1.06
CIITAP33076 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.67■■□□□ 1.06
CIITAP33076 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.67■■□□□ 1.06
CIITAP33076 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CIITAP33076 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CIITAP33076 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CIITAP33076 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.66■■□□□ 1.06
CIITAP33076 TSPY14P-201ENST00000303979 915 ntBASIC21.66■■□□□ 1.06
CIITAP33076 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.66■■□□□ 1.06
CIITAP33076 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.66■■□□□ 1.06
CIITAP33076 CA15P1-201ENST00000481698 905 ntBASIC21.66■■□□□ 1.06
CIITAP33076 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.66■■□□□ 1.06
CIITAP33076 NAPSB-206ENST00000562112 1266 ntBASIC21.66■■□□□ 1.06
CIITAP33076 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.66■■□□□ 1.06
CIITAP33076 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.66■■□□□ 1.06
CIITAP33076 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CIITAP33076 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
CIITAP33076 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CIITAP33076 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CIITAP33076 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CIITAP33076 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CIITAP33076 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CIITAP33076 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CIITAP33076 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CIITAP33076 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CIITAP33076 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CIITAP33076 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.65■■□□□ 1.06
CIITAP33076 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.65■■□□□ 1.06
CIITAP33076 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.65■■□□□ 1.06
CIITAP33076 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.65■■□□□ 1.06
CIITAP33076 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms