Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.81■□□□□ 0.76
COL9A1P20849 AC011498.5-201ENST00000592027 486 ntBASIC19.81■□□□□ 0.76
COL9A1P20849 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 AC112497.1-201ENST00000624824 639 ntBASIC19.81■□□□□ 0.76
COL9A1P20849 AC012183.1-201ENST00000625197 499 ntBASIC19.81■□□□□ 0.76
COL9A1P20849 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.81■□□□□ 0.76
COL9A1P20849 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 AC096733.2-201ENST00000609937 1394 ntBASIC19.81■□□□□ 0.76
COL9A1P20849 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.81■□□□□ 0.76
COL9A1P20849 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.8■□□□□ 0.76
COL9A1P20849 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
COL9A1P20849 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL9A1P20849 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL9A1P20849 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.8■□□□□ 0.76
COL9A1P20849 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.8■□□□□ 0.76
COL9A1P20849 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.8■□□□□ 0.76
COL9A1P20849 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
COL9A1P20849 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.8■□□□□ 0.76
COL9A1P20849 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.8■□□□□ 0.76
COL9A1P20849 RNPS1P1-201ENST00000507437 918 ntBASIC19.8■□□□□ 0.76
COL9A1P20849 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.8■□□□□ 0.76
COL9A1P20849 AC011298.2-201ENST00000617989 482 ntBASIC19.8■□□□□ 0.76
COL9A1P20849 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.8■□□□□ 0.76
COL9A1P20849 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL9A1P20849 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.79■□□□□ 0.76
COL9A1P20849 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.79■□□□□ 0.76
COL9A1P20849 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL9A1P20849 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
COL9A1P20849 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.79■□□□□ 0.76
COL9A1P20849 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.79■□□□□ 0.76
COL9A1P20849 HLA-A-209ENST00000638375 975 ntBASIC19.79■□□□□ 0.76
COL9A1P20849 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
COL9A1P20849 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL9A1P20849 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.79■□□□□ 0.76
COL9A1P20849 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.78■□□□□ 0.76
COL9A1P20849 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.78■□□□□ 0.76
COL9A1P20849 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.78■□□□□ 0.76
COL9A1P20849 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 COX20P2-201ENST00000452636 358 ntBASIC19.78■□□□□ 0.76
COL9A1P20849 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.78■□□□□ 0.76
COL9A1P20849 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL9A1P20849 AC008040.2-201ENST00000461049 708 ntBASIC19.78■□□□□ 0.76
COL9A1P20849 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.78■□□□□ 0.76
COL9A1P20849 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.78■□□□□ 0.76
COL9A1P20849 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.78■□□□□ 0.76
COL9A1P20849 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL9A1P20849 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.77■□□□□ 0.76
COL9A1P20849 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL9A1P20849 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
COL9A1P20849 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL9A1P20849 UPF3AP3-201ENST00000420996 769 ntBASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms