Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SIX3O95343 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SIX3O95343 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX3O95343 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 IRX1P1-201ENST00000438849 1838 ntBASIC18.79■□□□□ 0.6
SIX3O95343 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SIX3O95343 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SIX3O95343 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SIX3O95343 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SIX3O95343 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.79■□□□□ 0.6
SIX3O95343 UNC93B5-201ENST00000530315 699 ntBASIC18.79■□□□□ 0.6
SIX3O95343 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX3O95343 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX3O95343 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX3O95343 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX3O95343 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX3O95343 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SIX3O95343 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX3O95343 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.78■□□□□ 0.6
SIX3O95343 POM121L13P-201ENST00000422362 380 ntBASIC18.78■□□□□ 0.6
SIX3O95343 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX3O95343 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX3O95343 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.78■□□□□ 0.6
SIX3O95343 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SIX3O95343 AL138781.2-201ENST00000617896 1843 ntBASIC18.78■□□□□ 0.6
SIX3O95343 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SIX3O95343 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX3O95343 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX3O95343 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX3O95343 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX3O95343 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX3O95343 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX3O95343 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SIX3O95343 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX3O95343 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
SIX3O95343 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX3O95343 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SIX3O95343 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SIX3O95343 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SIX3O95343 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.77■□□□□ 0.6
SIX3O95343 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.77■□□□□ 0.6
SIX3O95343 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.77■□□□□ 0.6
SIX3O95343 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 AC008403.3-201ENST00000598924 454 ntBASIC18.77■□□□□ 0.6
SIX3O95343 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.77■□□□□ 0.6
SIX3O95343 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
SIX3O95343 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX3O95343 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX3O95343 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SIX3O95343 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SIX3O95343 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SIX3O95343 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.76■□□□□ 0.59
SIX3O95343 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX3O95343 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX3O95343 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms