Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC27.14■■□□□ 1.94
NPHP4O75161 LINC00167-201ENST00000530583 1419 ntBASIC27.14■■□□□ 1.94
NPHP4O75161 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP4O75161 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.93
NPHP4O75161 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC27.14■■□□□ 1.93
NPHP4O75161 TK1-205ENST00000590862 642 ntTSL 3 BASIC27.14■■□□□ 1.93
NPHP4O75161 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC27.14■■□□□ 1.93
NPHP4O75161 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC27.14■■□□□ 1.93
NPHP4O75161 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.93
NPHP4O75161 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC27.14■■□□□ 1.93
NPHP4O75161 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP4O75161 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP4O75161 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP4O75161 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC27.13■■□□□ 1.93
NPHP4O75161 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC27.13■■□□□ 1.93
NPHP4O75161 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 AC007225.1-201ENST00000566331 1836 ntBASIC27.13■■□□□ 1.93
NPHP4O75161 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP4O75161 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC27.13■■□□□ 1.93
NPHP4O75161 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
NPHP4O75161 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 KRT18P58-201ENST00000527480 1120 ntBASIC27.13■■□□□ 1.93
NPHP4O75161 REXO1L6P-202ENST00000619970 1078 ntBASIC27.13■■□□□ 1.93
NPHP4O75161 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP4O75161 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
NPHP4O75161 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP4O75161 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP4O75161 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP4O75161 UBC-206ENST00000538617 1303 ntTSL 5 BASIC27.12■■□□□ 1.93
NPHP4O75161 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP4O75161 BAALC-202ENST00000306391 243 ntTSL 5 BASIC27.12■■□□□ 1.93
NPHP4O75161 BAALC-204ENST00000330955 222 ntTSL 5 BASIC27.12■■□□□ 1.93
NPHP4O75161 AC099336.1-202ENST00000602961 463 ntBASIC27.12■■□□□ 1.93
NPHP4O75161 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC27.12■■□□□ 1.93
NPHP4O75161 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP4O75161 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP4O75161 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
NPHP4O75161 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC27.11■■□□□ 1.93
NPHP4O75161 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP4O75161 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP4O75161 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP4O75161 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC27.11■■□□□ 1.93
NPHP4O75161 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC27.11■■□□□ 1.93
NPHP4O75161 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC27.11■■□□□ 1.93
NPHP4O75161 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC27.11■■□□□ 1.93
NPHP4O75161 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC27.11■■□□□ 1.93
NPHP4O75161 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP4O75161 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.11■■□□□ 1.93
NPHP4O75161 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP4O75161 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP4O75161 AC233702.3-201ENST00000578656 1387 ntBASIC27.11■■□□□ 1.93
NPHP4O75161 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
NPHP4O75161 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP4O75161 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP4O75161 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC27.1■■□□□ 1.93
NPHP4O75161 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC27.1■■□□□ 1.93
NPHP4O75161 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
NPHP4O75161 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP4O75161 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
NPHP4O75161 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP4O75161 SMG8-203ENST00000578922 2178 ntBASIC27.1■■□□□ 1.93
NPHP4O75161 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
NPHP4O75161 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP4O75161 AC006128.1-201ENST00000624704 1661 ntBASIC27.09■■□□□ 1.93
NPHP4O75161 TLE1-202ENST00000376484 666 ntTSL 3 BASIC27.09■■□□□ 1.93
NPHP4O75161 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP4O75161 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC27.09■■□□□ 1.93
NPHP4O75161 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
NPHP4O75161 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP4O75161 ABR-217ENST00000572441 563 ntTSL 4 BASIC27.09■■□□□ 1.93
NPHP4O75161 MIR3917-201ENST00000580971 93 ntBASIC27.09■■□□□ 1.93
NPHP4O75161 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC27.09■■□□□ 1.93
NPHP4O75161 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
NPHP4O75161 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
NPHP4O75161 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC27.09■■□□□ 1.93
NPHP4O75161 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
NPHP4O75161 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP4O75161 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC27.09■■□□□ 1.93
NPHP4O75161 FEM1AP4-201ENST00000443167 1987 ntBASIC27.08■■□□□ 1.93
NPHP4O75161 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC27.08■■□□□ 1.93
NPHP4O75161 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP4O75161 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP4O75161 HMGN1P19-201ENST00000436976 333 ntBASIC27.08■■□□□ 1.93
NPHP4O75161 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC27.08■■□□□ 1.93
NPHP4O75161 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC27.08■■□□□ 1.93
NPHP4O75161 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC27.08■■□□□ 1.93
NPHP4O75161 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC27.08■■□□□ 1.93
NPHP4O75161 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP4O75161 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP4O75161 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
NPHP4O75161 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NPHP4O75161 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
NPHP4O75161 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
NPHP4O75161 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
NPHP4O75161 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC27.07■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms