Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.91■□□□□ 0.46
PRKNO60260 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.91■□□□□ 0.46
PRKNO60260 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PRKNO60260 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PRKNO60260 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.9■□□□□ 0.46
PRKNO60260 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PRKNO60260 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.9■□□□□ 0.46
PRKNO60260 FSCN1P1-201ENST00000568912 1481 ntBASIC17.9■□□□□ 0.46
PRKNO60260 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.9■□□□□ 0.46
PRKNO60260 AL390955.1-201ENST00000428694 934 ntBASIC17.9■□□□□ 0.46
PRKNO60260 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.9■□□□□ 0.46
PRKNO60260 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKNO60260 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.9■□□□□ 0.46
PRKNO60260 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PRKNO60260 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
PRKNO60260 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
PRKNO60260 KRT8P9-201ENST00000558927 1449 ntBASIC17.89■□□□□ 0.46
PRKNO60260 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
PRKNO60260 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PRKNO60260 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PRKNO60260 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.89■□□□□ 0.45
PRKNO60260 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 UNC93B2-201ENST00000285383 730 ntBASIC17.89■□□□□ 0.45
PRKNO60260 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.89■□□□□ 0.45
PRKNO60260 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 AC087499.1-201ENST00000418141 1075 ntBASIC17.89■□□□□ 0.45
PRKNO60260 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.89■□□□□ 0.45
PRKNO60260 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
PRKNO60260 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.89■□□□□ 0.45
PRKNO60260 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
PRKNO60260 AC130371.2-201ENST00000619443 611 ntBASIC17.89■□□□□ 0.45
PRKNO60260 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.89■□□□□ 0.45
PRKNO60260 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.89■□□□□ 0.45
PRKNO60260 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PRKNO60260 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
PRKNO60260 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 AC091390.4-202ENST00000476426 537 ntBASIC17.88■□□□□ 0.45
PRKNO60260 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.88■□□□□ 0.45
PRKNO60260 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.88■□□□□ 0.45
PRKNO60260 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 AC011298.2-201ENST00000617989 482 ntBASIC17.88■□□□□ 0.45
PRKNO60260 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PRKNO60260 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PRKNO60260 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PRKNO60260 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PRKNO60260 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms