Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH4O15457 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
MSH4O15457 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
MSH4O15457 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH4O15457 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH4O15457 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH4O15457 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSH4O15457 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
MSH4O15457 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH4O15457 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH4O15457 AC133561.5-201ENST00000635547 218 ntBASIC21.62■■□□□ 1.05
MSH4O15457 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
MSH4O15457 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH4O15457 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH4O15457 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
MSH4O15457 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
MSH4O15457 TEX21P-204ENST00000641479 1693 ntBASIC21.61■■□□□ 1.05
MSH4O15457 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
MSH4O15457 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH4O15457 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH4O15457 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH4O15457 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH4O15457 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH4O15457 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
MSH4O15457 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
MSH4O15457 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
MSH4O15457 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH4O15457 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH4O15457 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH4O15457 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH4O15457 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH4O15457 ECEL1P3-201ENST00000427961 737 ntBASIC21.6■■□□□ 1.05
MSH4O15457 TSPY21P-201ENST00000433481 731 ntBASIC21.6■■□□□ 1.05
MSH4O15457 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH4O15457 PRSS44-201ENST00000515154 1146 ntBASIC21.6■■□□□ 1.05
MSH4O15457 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH4O15457 AC097493.4-201ENST00000641197 219 ntBASIC21.6■■□□□ 1.05
MSH4O15457 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH4O15457 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH4O15457 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSH4O15457 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH4O15457 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH4O15457 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH4O15457 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH4O15457 AL032819.2-201ENST00000624543 2162 ntBASIC21.6■■□□□ 1.05
MSH4O15457 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH4O15457 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH4O15457 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH4O15457 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH4O15457 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 NAPSB-206ENST00000562112 1266 ntBASIC21.59■■□□□ 1.05
MSH4O15457 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH4O15457 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.59■■□□□ 1.05
MSH4O15457 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH4O15457 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH4O15457 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH4O15457 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH4O15457 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.58■■□□□ 1.05
MSH4O15457 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
MSH4O15457 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH4O15457 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH4O15457 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH4O15457 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms