Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 UNC93B4-201ENST00000505679 747 ntBASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 AC090192.1-201ENST00000517740 490 ntBASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 AL031598.1-201ENST00000561511 1773 ntBASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
TCRBV7S3A2A0A539 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 AC007613.1-201ENST00000572811 2597 ntBASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.55■□□□□ 0.72
TCRBV7S3A2A0A539 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 AC008403.3-201ENST00000598924 454 ntBASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.54■□□□□ 0.72
TCRBV7S3A2A0A539 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms